Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium5854g00007 | ATGGATATGTACATTCGAGTTAAACGTAGTAAGACAACATACTTCATCCGGTGCAAGGCATCTGATAAAATTATTGACATAAAGCAGAAGTTGCAAGAACTTGTTGATCAACCAACTAATAATCAACGGTTAATTCTACCTGGTACAGGGGAAGTATTAGAAGACTCTAAGACTTTGGCAGATCAAAAGGTAGAGAATGATGCTGTTGTAGCACTGACCTTGAGAAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTTCGGCCTAACGATTTCTACCAAGCTCGGGATGCAGATGGTGCCAGTTGGTAA | 312 | 0.3974 | MDMYIRVKRSKTTYFIRCKASDKIIDIKQKLQELVDQPTNNQRLILPGTGEVLEDSKTLADQKVENDAVVALTLRKDDNEFEEVNIVRPNDFYQARDADGASW | 103 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium5854g00007 | 103 | SUPERFAMILY | Ubiquitin-like | 1 | 79 | IPR029071 | - | |
| Vium5854g00007 | 103 | PANTHER | OS03G0364000 PROTEIN | 1 | 101 | - | - | |
| Vium5854g00007 | 103 | Pfam | Ubiquitin family | 5 | 76 | IPR000626 | GO:0005515 | |
| Vium5854g00007 | 103 | Gene3D | - | 1 | 92 | - | - | |
| Vium5854g00007 | 103 | SMART | ubq_7 | 3 | 75 | IPR000626 | GO:0005515 | |
| Vium5854g00007 | 103 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 79 | IPR000626 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium5854g00007 | Vium-Chr5854 | 59292 | 64599 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium5854g00007 | 1 | 75 | Cytoplasmic Ribosomal Protein Gene Family | AT1G23410 | 33.333 | 8.56e-07 | 43.1 |