Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5854g00006 ATGTACATTCGAGTTAAACGTAGTAAGACAACATACTTCATCCGGTGCAAGGCATCTGATAAAATTATTGACATAAAGCAGAAGTTGCAAGAACTTGTTGATCAACCAACTAATAATCAACGGTTAATTCTACCTGGTACAGGGGAAGTATTAGAAGACTCTAAGACTTTGGCAGATCAAAAGGTAGAGAATGATGCTGTTGTAGCACTGACCTTGAGAAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTTCGGCCTAACGATTTCTACCAAGCTCGGGATGCAGATGGTGCCAGTTGGTAA 306 0.3987 MYIRVKRSKTTYFIRCKASDKIIDIKQKLQELVDQPTNNQRLILPGTGEVLEDSKTLADQKVENDAVVALTLRKDDNEFEEVNIVRPNDFYQARDADGASW 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5854g00006 101 ProSiteProfiles Ubiquitin domain profile. 1 77 IPR000626 GO:0005515
Vium5854g00006 101 PANTHER OS03G0364000 PROTEIN 1 99 - -
Vium5854g00006 101 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vium5854g00006 101 SMART ubq_7 1 73 IPR000626 GO:0005515
Vium5854g00006 101 Gene3D - 1 90 - -
Vium5854g00006 101 SUPERFAMILY Ubiquitin-like 2 77 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5854g00006 Vium-Chr5854 59291 64599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5854g00006 1 73 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 36.486 4.06e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5854g00006 K03873 - gmx:100499885 194.126