Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5853g00011 ATGCGATCACCGAATGAAATGAAAAAGAAACGAAAAGAAAGCGAGGCCAGTGAGCGGTCGAACTGGCCGGAGGTTTCGAGGTCGCATTACTCGCTGGAGCGTGGTTCGAGGTTTAACAAACGGTGCAGGGAAGACGGCGTGGCCACGGTTCCCACTCGCGGCGCGTCGTCACTTTTGACTGCGGCCCGGGGATTGAAGCGGAAGATAGGGTGCATTGACGATGCCACGCGGATGGGGAGGAGCGTGAGGATCGAGGACGATTACGTGATCGGAGGGAGCACGATCGGGCAGGGGAAGTTTGGGTCGGTGACGATTTGCCGCGCACGTGCGGGGGGCGTGGAGTACGCGTGCAAGACTCTCAGGAAGGGGGAGGAGACGGTGCACCGCGAGGTGGAGATAATGCAGCACGTGTCGGGGCACCCTGGGGTCGTAACTCTTAAAGCGGTGTATGAGGATGCGGAGTGTTGGCACCTTGTGATGGAGCTGTGCTCCGGGGGAAGGTTGGTTGATAAGATGAGGGAGGGGCCGTGTTCGGAACACGTTGCCGCTTGGATACTGAAGGAGGTAATGATGGTGGTTAAGTATTGTCATGATATGGGCGTGGTCCATAGGGATATTAAGCCTGAGAATGTTCTCATTACTGGAACTGGGATGATAAAGCTCGCTGATTTTGGCCTCGCCATCCGAATTTGTGAGGGTCAGAATTTGAAAGGTGTGGCTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATATTCTGAGAAGGTGGATATATGGAGTTCTGGGGTGCTCCTGCATGCTTTGTTGGTTGGTTTTCTTCCATTTAAAGGCGACTCACAGGATGCAGTTTTTGAGGAAATAAAAAATTTCAAACTAGATTTCCAAACAGGGGTGTGGGAATCGATATCTAAACCTGCTCGAGATCTTGTTGGGAGAATGTTGACTAGGGATGTTTCAGCAAGGATAACAGCCGATGAAGTACTGAGTCATCCATGGATATTGTTCTATACGGCGCAAACATTGAACACGCTGCCCGTTAAATCAAAATTGAAACCCCAAAATGCTGCTACTTGCCACAAGTTTGTTACTGCACCTGAATCTGGGTTTGGAGGAAACAGGATGGATGATTGTTCCCTAAATGGTTCAAGCTCGTTTTCATCCTCTGAAAGTGGCAATTCAGAATATGATGATGACTGTGAGTGGATTGATGCCCTTACCACTGCGGTTTCACATGTGACGATATCCGAAGCTAAGAGGACCAAGCTGTGGGGTCCCACTGGTCCATTTGATTCACAAGGTTCATCTAACTTGAAGACTAACCTCTGTAAAGCATTCTGA 1347 0.5033 MRSPNEMKKKRKESEASERSNWPEVSRSHYSLERGSRFNKRCREDGVATVPTRGASSLLTAARGLKRKIGCIDDATRMGRSVRIEDDYVIGGSTIGQGKFGSVTICRARAGGVEYACKTLRKGEETVHREVEIMQHVSGHPGVVTLKAVYEDAECWHLVMELCSGGRLVDKMREGPCSEHVAAWILKEVMMVVKYCHDMGVVHRDIKPENVLITGTGMIKLADFGLAIRICEGQNLKGVAGSPAYVAPEVLLGRYSEKVDIWSSGVLLHALLVGFLPFKGDSQDAVFEEIKNFKLDFQTGVWESISKPARDLVGRMLTRDVSARITADEVLSHPWILFYTAQTLNTLPVKSKLKPQNAATCHKFVTAPESGFGGNRMDDCSLNGSSSFSSSESGNSEYDDDCEWIDALTTAVSHVTISEAKRTKLWGPTGPFDSQGSSNLKTNLCKAF 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5853g00011 448 CDD STKc_CAMK 87 335 - -
Vium5853g00011 448 Gene3D Transferase(Phosphotransferase) domain 1 169 367 - -
Vium5853g00011 448 SUPERFAMILY Protein kinase-like (PK-like) 83 368 IPR011009 -
Vium5853g00011 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vium5853g00011 448 Gene3D Phosphorylase Kinase; domain 1 91 168 - -
Vium5853g00011 448 Pfam Protein kinase domain 93 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5853g00011 448 MobiDBLite consensus disorder prediction 1 29 - -
Vium5853g00011 448 SMART serkin_6 89 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5853g00011 448 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Vium5853g00011 448 PANTHER SERINE/THREONINE-PROTEIN KINASE 75 360 - -
Vium5853g00011 448 MobiDBLite consensus disorder prediction 1 22 - -
Vium5853g00011 448 ProSiteProfiles Protein kinase domain profile. 89 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5853g00011 448 FunFam Maternal embryonic leucine zipper kinase 86 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5853g00011 Vium-Chr5853 185667 189323 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5853g00011 92 336 EF-hand Containing Proteins AT4G04720 45.312 5.18e-74 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium5853g00011 Pkinase 4.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5853g00011 - - gmx:100809977 695.656