Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5853g00003 ATGGAATTCGACGAGCAAGAGGAGCAGGAGGAGGAAATGGGGATGCCGGACCCGCCGGTGCCAGCGCCGGTCGCAAGTTACGACTCGCTTGGAAACTCCGCGGCTCGCTCCAAAGTCGGCGCCGAGGGACGAAAGGGCGCGTTCGGCGCCGCCGCGGTACGATACCGAGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGCCACGCTGTCGACGGATGCTGCGAGTTCATGCCGGCCGGCGAGGACGGCACTCTGGAGGCCGTGATTTGCGCTGCCTGCAACTGCCACCGGAATTTTCACCGCAAGGAGATCGACGGCGAGATGACCTCCTTTCACCACCGAGCGCAGCCACCGCCGCCTCTGCACCACCACCATCAGTTCTCCCCGTACTACCACCACCGAGTCCCGCAGCACCCCGGCGCCGGCGGCTACCTTCACCACCACCTCGCCACACCTCCAATGGCGCAGCACCGCCCGCTCGCCCTCCCGGCAGCGGCCTCCGGCGGAGGACTCAGCCGCGAAGACGAAGACATCTCGAATCCGAGCAGCAGCGGCGGCGGAGGTGGCGGAGGATCCAAAAAACGGTTCCGAACGAAGTTCACGCAGGAACAGAAGGATAAGATGCTGGCATTCGCGGAACAGCTGGGGTGGAGAATCCAGAAGCACGATGAATCTGCTGTGGAACAGTTCTGTGCCGAGACCAATGTGGAGAGAAAAGTTCTCAAAGTTTGGATGCACAATAACAAGAACACTCTCGCTGAAAGTCCCCACCAACCATTTTTGTTCCCGTTTTGGACACATTTATTCAACCTAGGGTGA 822 0.6107 MEFDEQEEQEEEMGMPDPPVPAPVASYDSLGNSAARSKVGAEGRKGAFGAAAVRYRECQKNHAVSFGGHAVDGCCEFMPAGEDGTLEAVICAACNCHRNFHRKEIDGEMTSFHHRAQPPPPLHHHHQFSPYYHHRVPQHPGAGGYLHHHLATPPMAQHRPLALPAAASGGGLSREDEDISNPSSSGGGGGGGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVEQFCAETNVERKVLKVWMHNNKNTLAESPHQPFLFPFWTHLFNLG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5853g00003 273 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Vium5853g00003 273 Gene3D - 179 256 - -
Vium5853g00003 273 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 253 - -
Vium5853g00003 273 SUPERFAMILY Homeodomain-like 180 252 IPR009057 -
Vium5853g00003 273 MobiDBLite consensus disorder prediction 1 29 - -
Vium5853g00003 273 NCBIfam homeobox domain, ZF-HD class 194 251 IPR006455 -
Vium5853g00003 273 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Vium5853g00003 273 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Vium5853g00003 273 MobiDBLite consensus disorder prediction 165 196 - -
Vium5853g00003 273 FunFam Zinc-finger homeodomain protein 2 181 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5853g00003 Vium-Chr5853 24044 26023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5853g00003 1 253 ZF-HD Transcription Factor Family AT4G24660 53.360 9.67e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium5853g00003 ZF-HD_dimer 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5853g00003 - - gmx:100776421 405.601