Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5853g00002 ATGGAATTCGACGAGCAAGAGGAGCAGGAGGAGGAAATGGGGATGCCGGACCCGCCGGTGCCAGCGCCGGTCGCAAGTTACGACTCGCTTGGAAACTCCGCGGCTCGCTCCAAAGTCGGCGCCGAGGGACGAAAGGGCGCGTTCGGCGCCGCCGCGGTACGATACCGAGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGCCACGCTGTCGACGGATGCTGCGAGTTCATGCCGGCCGGCGAGGACGGCACTCTGGAGGCCGTGATTTGCGCTGCCTGCAACTGCCACCGGAATTTTCACCGCAAGGAGATCGACGGCGAGATGACCTCCTTTCACCACCGAGCGCAGCCACCGCCGCCTCTGCACCACCACCATCAGTTCTCCCCGTACTACCACCACCGAGTCCCGCAGCACCCCGGCGCCGGCGGCTACCTTCACCACCACCTCGCCACACCTCCAATGGCGCAGCACCGCCCGCTCGCCCTCCCGGCAGCGGCCTCCGGCGGAGGACTCAGCCGCGAAGACGAAGACATCTCGAATCCGAGCAGCAGCGGCGGCGGAGGTGGCGGAGGATCCAAAAAACGGTTCCGAACGAAGTTCACGCAGGAACAGAAGGATAAGATGCTGGCATTCGCGGAACAGCTGGGGTGGAGAATCCAGAAGCACGATGAATCTGCTGTGGAACAGTTCTGTGCCGAGACCAATGTGGAGAGAAAAGTTCTCAAAGTTTGGATGCACAATAACAAGAACACTCTCGCATGTCGTGGAATGGCTTACAGATTACAACAGTAG 795 0.6164 MEFDEQEEQEEEMGMPDPPVPAPVASYDSLGNSAARSKVGAEGRKGAFGAAAVRYRECQKNHAVSFGGHAVDGCCEFMPAGEDGTLEAVICAACNCHRNFHRKEIDGEMTSFHHRAQPPPPLHHHHQFSPYYHHRVPQHPGAGGYLHHHLATPPMAQHRPLALPAAASGGGLSREDEDISNPSSSGGGGGGGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVEQFCAETNVERKVLKVWMHNNKNTLACRGMAYRLQQ 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5853g00002 264 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Vium5853g00002 264 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Vium5853g00002 264 Gene3D - 179 257 - -
Vium5853g00002 264 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 253 - -
Vium5853g00002 264 MobiDBLite consensus disorder prediction 1 29 - -
Vium5853g00002 264 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Vium5853g00002 264 FunFam Zinc-finger homeodomain protein 2 181 255 - -
Vium5853g00002 264 NCBIfam homeobox domain, ZF-HD class 194 251 IPR006455 -
Vium5853g00002 264 MobiDBLite consensus disorder prediction 165 196 - -
Vium5853g00002 264 SUPERFAMILY Homeodomain-like 180 252 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5853g00002 Vium-Chr5853 24044 28749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5853g00002 1 253 ZF-HD Transcription Factor Family AT4G24660 53.360 4.42e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium5853g00002 ZF-HD_dimer 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5853g00002 - - gmx:100776421 402.519