Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5852g00001 ATGTCATGCCCAATTTTGCAACTTGATTCTGAAAAAGACATTCTTGATCCCGAGATAGTATCGTGCACAAAGTTGAGTGATGTTTACTCCGTACAGTGGTATGTACAGGATTATTTGAAAAACACCGTGGTTGCGGAATGGACCAGCCCCAATTGCAGTTCCTGTGAAGCACAAGGAAGTAAATGTAGATACAAGAATGGTACCCAAAGTGAAGTTGAATGTTTTGTTTGCCCCACAAACGGGCTTCCAACATCAACTATTGTACTTATCGCAGCAGAAGATACACCCACAGGGGGATTCGGTGGTTTCCTTCTTGTGCTGCTTTTGGCCAAGGCTTTGTTTCATGTGCATGACCATTATAAGATGAAAGGAGAAGACCAAGCTCGAATAGAGAAATTCTTGGAGGATTACAAGGCAATGAAGCCTACAAGATTCACTTACGCTGACATTAAGAGAATCACAAATGGGTTTAGTGAGAGTTTGGGAGAAGGAGCTCATGGAGCAGTGTTCAAGGGAATGCTCTCCCGCGATATTCTCGTTGCTGTGAAGATACTCAATGACGCTGTTGGAGATGGAAAGGATTTCATAAACGAAGTGGGAACAATGGGCAAAATTCATCAT 621 0.4283 MSCPILQLDSEKDILDPEIVSCTKLSDVYSVQWYVQDYLKNTVVAEWTSPNCSSCEAQGSKCRYKNGTQSEVECFVCPTNGLPTSTIVLIAAEDTPTGGFGGFLLVLLLAKALFHVHDHYKMKGEDQARIEKFLEDYKAMKPTRFTYADIKRITNGFSESLGEGAHGAVFKGMLSRDILVAVKILNDAVGDGKDFINEVGTMGKIHH 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5852g00001 207 PANTHER OS07G0415500 PROTEIN 103 207 - -
Vium5852g00001 207 ProSiteProfiles Protein kinase domain profile. 155 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5852g00001 207 SUPERFAMILY Protein kinase-like (PK-like) 137 207 IPR011009 -
Vium5852g00001 207 ProSitePatterns Protein kinases ATP-binding region signature. 161 183 IPR017441 GO:0005524
Vium5852g00001 207 Gene3D Phosphorylase Kinase; domain 1 128 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5852g00001 Vium-Chr5852 443 1131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5852g00001 120 207 Receptor kinase-like Gene Family AT1G66980 46.067 2.82e-17 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium5852g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5852g00001 - - vum:124841800 406.371