Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium584g00005 ATGAAGAAAGTAGTCTCTCTCATCTCTTTATGCCACCTTGTTGTGATGAAGTTACTACTGCTATCAAAGACTGTTATAGCAGAACCAAGGGCCAAGACGGTCCTAGTAACATGTGGCAATGTACGAGAGCATAATTCTACTATATTTGTTCCCAATTTTGTTGCAACTATGGAGAAGATCAGTGATGAGATGCGGAAAACTGGCTTTGGCACAGCAGTTGTAGGGACAGGACCTGATACTAACTATGGCCTGGCCCAGTGTTATGGGGATCTTTCATTGCTTGACTGTGTATTGTGCTATGCTGAGGCACGTACTGTTCTTCCTCAGTGTTACCCTTATAACTCTGGTCGCATTTTCCTTGATGGGTGCTTCATGAGGGCTGGGAATTATAGTTTCTTTAATGAGTATACAGGACCAGGAGACAAAGCTGTATGTGGGAACACGACCAAGAAGAATTCAAGTTTTCAAGCAGCGGCAAAGCAAGCAGTTTTAAGAGCAGTTCAAGATGCACCCAACAACAAAGGATATGCTAGAGGGAATGTTGCTGTCGCAGGAACAACTAACCAATCTGTTTATGTTCTGGCGGATTGTTGGAGGACTTTGGACCAAAGGTCTTGCAAAGCATGTCTTGAGAATGCATATTTTTCCTTACAGGGATGCTTGCCCTGGTCAGAAGGGCGAGCACTCAACACCGGCTGCTTCATGAGGTACTCAGACACAGATTTTCTTAACAAGGAACAGGAAAATGGGAGTTCAAGAGGTAACGTGGTAGTAATAGTGGTTGCAGTAGTTAGTTCGATGATTGTTTTGGTGGTTGGAGTAGCTATTGGAGTTTATATATGGAAACAAAGATACATTCAGAAGAAACGAAGAGGTTCAAATGATGCAGAAAAGTTAGCAAAATCTCTTCAGAACAAAAGCTTGAACTTCAAGTACTCTACATTGGACAAAGCTACTGGATCTTTTCATGAAAATAACAAGTTAGGGCAAGGAGGATTTGGAACAGTTTATAAAGGAGTTCTAGCTGATGGAAGAGAGATTGCTATCAAGAGGTTATATTTCAACAACAGACATAGAGCAGCAGATTTCTACAACGAAGTCAACATAATTAGTAGTGTGGAACACAAGAATCTGGTCAGACTGTTAGGATGCAGTTGTTCAGGACCTGAAAGCCTGCTTGTTTATGAATTCCTGCCCAATAAAAGTCTTGATCGCTTCATTTTTGATAAAAACAAGGGCAAAGAATTAAACTGGGAAAAGAGATTTGAAATTATCATCGGGACAGCCGAAGGATTAGTTTATCTGCACGAAAACTCTAAAACAAAGATAATTCACAGAGATATAAAAGCCAGCAACATCCTATTGGATGCAAAGTTTCGTGCTAAAATTGCAGATTTTGGTCTGGCCAGGTCCTTTCAAGAGGACAAGAGCCACATAAGTACAGCTATTGCAGGAACTTTGGGGTATATGGCTCCTGAGTACCTAGCTCATGGTCAGTTAACAGAAAAGGCAGACGTGTATAGTTTTGGAGTGTTGCTGCTAGAGATGGTCACTGGTAGACAGAACAACAGGAGCATAGTATCGGAGTATTCAGACAGCTTAGTTACAGTTATCAGGCATGGAAGCATTTTCAGGCAGGGACTGCTGAACAATTATTTGATCCAAATATAG 1671 0.4135 MKKVVSLISLCHLVVMKLLLLSKTVIAEPRAKTVLVTCGNVREHNSTIFVPNFVATMEKISDEMRKTGFGTAVVGTGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCYPYNSGRIFLDGCFMRAGNYSFFNEYTGPGDKAVCGNTTKKNSSFQAAAKQAVLRAVQDAPNNKGYARGNVAVAGTTNQSVYVLADCWRTLDQRSCKACLENAYFSLQGCLPWSEGRALNTGCFMRYSDTDFLNKEQENGSSRGNVVVIVVAVVSSMIVLVVGVAIGVYIWKQRYIQKKRRGSNDAEKLAKSLQNKSLNFKYSTLDKATGSFHENNKLGQGGFGTVYKGVLADGREIAIKRLYFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDKNKGKELNWEKRFEIIIGTAEGLVYLHENSKTKIIHRDIKASNILLDAKFRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEMVTGRQNNRSIVSEYSDSLVTVIRHGSIFRQGLLNNYLIQI 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium584g00005 556 ProSiteProfiles Gnk2-homologous domain profile. 137 242 IPR002902 -
Vium584g00005 556 Pfam Protein kinase domain 322 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium584g00005 556 FunFam Cysteine-rich receptor-like protein kinase 3 141 242 - -
Vium584g00005 556 Pfam Salt stress response/antifungal 47 129 IPR002902 -
Vium584g00005 556 Pfam Salt stress response/antifungal 145 239 IPR002902 -
Vium584g00005 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Vium584g00005 556 FunFam Putative DUF26-domain receptor-like protein kinase family protein 290 397 - -
Vium584g00005 556 ProSiteProfiles Protein kinase domain profile. 322 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium584g00005 556 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Vium584g00005 556 SUPERFAMILY Protein kinase-like (PK-like) 306 525 IPR011009 -
Vium584g00005 556 Gene3D Phosphorylase Kinase; domain 1 282 397 - -
Vium584g00005 556 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 534 - -
Vium584g00005 556 Gene3D - 142 242 IPR038408 -
Vium584g00005 556 Gene3D - 31 132 IPR038408 -
Vium584g00005 556 Gene3D Transferase(Phosphotransferase) domain 1 398 553 - -
Vium584g00005 556 ProSiteProfiles Gnk2-homologous domain profile. 31 132 IPR002902 -
Vium584g00005 556 FunFam Cysteine-rich receptor-like protein kinase 2 398 552 - -
Vium584g00005 556 Coils Coil 286 306 - -
Vium584g00005 556 FunFam Cysteine-rich receptor-like protein kinase 2 31 132 - -
Vium584g00005 556 SMART serkin_6 322 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium584g00005 Vium-Chr584 39742 43081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium584g00005 1 536 Receptor kinase-like Gene Family AT1G70520 69.759 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium584g00005 Pkinase 6.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium584g00005 - - gmx:100804094 965.681