Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5848g00011 ATGCCGGAAAACATGAGCATATCTGTCAATGGACAATCTCAAGTCCCACCTGGCTTCAGGTTCCATCCAACCGAGGAGGAGCTTCTTCAGTACTACTTGAGGAAGAAGGTCTCTTACGAGAAGATTGACCTCGATGTCATTCGTGATGTTGATCTCAACAAGCTCGAGCCATGGGATATTCAAGAGAAATGCAAAATAGGAACCACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGATAAGAAGTACCCCACAGGAACTCGCACCAATCGCGCCACTGCTGCCGGATTCTGGAAGGCCACTGGCCGTGACAAGGTCATTTACAGCAACGGAAAGAGGATTGGAATGAGAAAGACTCTGGTTTTCTACAAAGGAAGAGCCCCTCACGGCCAGAAATCTGACTGGATCATGCATGAATACAGACTCGACGACAACACCACCGGCGACACCAATATCGTGTCGAATGTGATGGGGGACGGCGGTCAAGAGGAAGGGTGGGTGGTGTGTAGGATATTCAAGAAGAAGAACAACCTGAAAACCCTAGACAGCCCGTTAGGTTCGGGAGAAGGTAGAAGGAGCCACCTGTTCGAGTCGTGCGACGAGGGAGCTTTGGAGCAAATACTTCAGCAAATGGGAAGGGGTTGCAAGGAAGAGAGCAGCTACGAGGGAAGCTACGGCTATGGAAGGTTGGGAAGGGGTTACGAGACAGGCGTGAACAATGACAGGTTCATGAAGCTGCCGAGCCTAGAGAGCCCAAAATCCACAAGCATGGAGAGTCAGCAGAACAACAACAGCAACAGTAATAATGGTGATAATAACAACGAGATGAACAATAATGGGTACCATCCCATTATTCCAGCAGACATGGGGACGGACAACGAAGGGTCATTCGCAACCCACCAGGTGAGTGGTGGTGACCCCAACATGGTTCACCCAATGGAGCCATCATCAGGTGGAGGAGGCCTCACCAACTGGGCTGCGCTGGACCGTTTGGTTGCCTCTCAGCTCAATGGCCAAACCGAGGCCTCTAGGCACTTCGCATGCTTCAACGACCCCACCATCGCCTACTGCACTCCCCACCATGATCTCCCATTGCCCACCCTCCGATCCTCATCAAATCCTTCATCAAACACCACCCTCACCAGACCTTCCGCTGCACCCGCATACATCAACCCCGCTCACGACTTCGCCAGCGAGATTGACCTCTGGAACTTCACCCGCTCCACCTCCGAACCTCTCTGCCACGTCTCCAACACCTCACTCTAG 1269 0.5217 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTGDTNIVSNVMGDGGQEEGWVVCRIFKKKNNLKTLDSPLGSGEGRRSHLFESCDEGALEQILQQMGRGCKEESSYEGSYGYGRLGRGYETGVNNDRFMKLPSLESPKSTSMESQQNNNSNSNNGDNNNEMNNNGYHPIIPADMGTDNEGSFATHQVSGGDPNMVHPMEPSSGGGGLTNWAALDRLVASQLNGQTEASRHFACFNDPTIAYCTPHHDLPLPTLRSSSNPSSNTTLTRPSAAPAYINPAHDFASEIDLWNFTRSTSEPLCHVSNTSL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5848g00011 422 MobiDBLite consensus disorder prediction 250 281 - -
Vium5848g00011 422 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Vium5848g00011 422 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 269 - -
Vium5848g00011 422 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Vium5848g00011 422 MobiDBLite consensus disorder prediction 245 294 - -
Vium5848g00011 422 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Vium5848g00011 422 FunFam NAC domain-containing protein 24 179 - -
Vium5848g00011 422 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5848g00011 Vium-Chr5848 141501 143762 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5848g00011 1 421 NAC Transcription Factor Family AT2G46770 52.874 5.81e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium5848g00011 NAM 3.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5848g00011 - - gmx:100793308 654.44