Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5848g00009 ATGTCTCAACAAAAGCAAGCTCAGATGGTAGGTGGTAACAACCAGGAGCAATATAATGACACAACTTTTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAAAGGGACACAATGAAGAGGTATTTTGAGCAATTTGGAGAGATCTTGGAGGCTGTTGTGATCACTGATAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGAGGCAGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGAAGAAGGGCTAATTGCAATCTTGCTTCTCTTGGTGCAAACAAGAACCGACCACCAACTTTTCAGCATGGTTCAGGACGGTTCAGGCCTCCACCACCTGCTTATCATGGTTCTTCATCTACTGCTACATTTTCCCATCAACCCCCTAGGCAATACTCATTTCCTTATTCAGCTTACGGATATTCTGGATATTCACAAGACAACTTGTATCCTATGAACTACTATAATGTCTATGGAGTTCAACAATTTTCAGCTTACTACCCATCTGCTGGAGCTTCTGGTGCAGTAGGGTTGATCCATAATATTTATCCCTTTTATGGTCAATATGCACAGAGTATTCAGGCTCATGGTTTTGGGGTTCAATACCCTCAAATGGCACAGTTTCCATTTTTGCCTGACCCTTATGGCTCCACTGGGATATTGTCATATCCTTCTTCAGTATCAGTGCCAACTACTACTGCAGTTTCAGTAACAGGAACTGCTACCACAACTATAACACCAACAACATCAACTGGTGTGACAGCAACAGTGGCTGGTAGTTCACAAGCCTCACAAGCAGCTTCTGAACAAAATTCTACATCTTCAAAGATACAGAACATGCAAGGCTAA 879 0.4289 MSQQKQAQMVGGNNQEQYNDTTFTKIFVGGLAWETQRDTMKRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTFQHGSGRFRPPPPAYHGSSSTATFSHQPPRQYSFPYSAYGYSGYSQDNLYPMNYYNVYGVQQFSAYYPSAGASGAVGLIHNIYPFYGQYAQSIQAHGFGVQYPQMAQFPFLPDPYGSTGILSYPSSVSVPTTTAVSVTGTATTTITPTTSTGVTATVAGSSQASQAASEQNSTSSKIQNMQG 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5848g00009 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Vium5848g00009 292 FunFam RNA-binding protein 24-B isoform X1 11 117 - -
Vium5848g00009 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Vium5848g00009 292 MobiDBLite consensus disorder prediction 272 292 - -
Vium5848g00009 292 PANTHER BOULE-RELATED 9 288 - -
Vium5848g00009 292 SUPERFAMILY RNA-binding domain, RBD 12 127 IPR035979 GO:0003676
Vium5848g00009 292 SMART rrm1_1 25 97 IPR000504 GO:0003723
Vium5848g00009 292 Gene3D - 1 117 IPR012677 -
Vium5848g00009 292 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5848g00009 Vium-Chr5848 89939 92639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5848g00009 20 100 C2H2 Transcription Factor Family AT2G19380 45.679 1.59e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5848g00009 - - pvu:PHAVU_010G118600g 482.256