Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5848g00008 ATGTCTCAACAAAAGCAAGCTCAGATGGTAGGTGGTAACAACCAGGAGCAATATAATGACACAACTTTTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAAAGGGACACAATGAAGAGGTATTTTGAGCAATTTGGAGAGATCTTGGAGGCTGTTGTGATCACTGATAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGAGGCAGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGAAGAAGGGCTAATTGCAATCTTGCTTCTCTTGGTGCAAACAAGAACCGACCACCAACTTTTCAGCATGGTTCAGGACGGTTCAGGCCTCCACCACCTGCTTATCATGGTTCTTCATCTACTGCTACATTTTCCCATCAACCCCCTAGGCAATACTCATTTCCTTATTCAGCTTACGGATATTCTGGATATTCACAAGACAACTTGTATCCTATGAACTACTATAATGTCTATGGAGTTCAACAATTTTCAGCTTACTACCCATCTGCTGGAGCTTCTGGTGCAGTAGGGTTGATCCATAATATTTATCCCTTTTATGGTCAATATGCACAGAGTATTCAGGCTCATGGTTTTGGGGTTCAATACCCTCAAATGGCACAGTTTCCATTTTTGCCTGACCCTTATGGCTCCACTGGGATATTGTCATATCCTTCTTCAGTATCAGTGCCAACTACTACTGCAGTAACAGGAACTGCTACCACAACTATAACACCAACAACATCAACTGGTGTGACAGCAACAGTGGCTGGTAGTTCACAAGCCTCACAAGCAGCTTCTGAACAAAATTCTACATCTTCAAAGATACAGAACATGCAAGGCTAA 873 0.4296 MSQQKQAQMVGGNNQEQYNDTTFTKIFVGGLAWETQRDTMKRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTFQHGSGRFRPPPPAYHGSSSTATFSHQPPRQYSFPYSAYGYSGYSQDNLYPMNYYNVYGVQQFSAYYPSAGASGAVGLIHNIYPFYGQYAQSIQAHGFGVQYPQMAQFPFLPDPYGSTGILSYPSSVSVPTTTAVTGTATTTITPTTSTGVTATVAGSSQASQAASEQNSTSSKIQNMQG 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5848g00008 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Vium5848g00008 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Vium5848g00008 290 FunFam RNA-binding protein 24-B isoform X1 11 117 - -
Vium5848g00008 290 Gene3D - 1 117 IPR012677 -
Vium5848g00008 290 PANTHER BOULE-RELATED 9 286 - -
Vium5848g00008 290 MobiDBLite consensus disorder prediction 269 290 - -
Vium5848g00008 290 SUPERFAMILY RNA-binding domain, RBD 12 127 IPR035979 GO:0003676
Vium5848g00008 290 SMART rrm1_1 25 97 IPR000504 GO:0003723
Vium5848g00008 290 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5848g00008 Vium-Chr5848 89939 92644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5848g00008 20 100 C2H2 Transcription Factor Family AT2G19380 45.679 1.50e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5848g00008 - - pvu:PHAVU_010G118600g 487.263