Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium5848g00007 | ATGGGGAAGAAGGGAAGTGGTAGTTCGTGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACAGTGACAAAAGGAGTGGTAGAAGAAGAGAAGACTGTGATCAAGAAGAAGACGAAGAAAAGAAAAGGGAAAAGAGAAGATGGATTTTCAGGAAGACTCACATGAGTCAGGAAGGAGTGAACAACAACAACAGTACTCAACAAAAGTTGAAGCATGATGTGGCGGCAGCTGGTGGGGTTTCAAGGACAGACCAGGATCAGAAGCATGCACTTGCTGTGGCGGTGGCCACAGCAGAAGCTGCCATGGCGACCGCTCAGGCGGCCGTGGAGGTGGCAAGGTTGAACAAACCTGCTAGCCATGCAAGGGAGCATTATGCTGCTGTTGTGATCCAAACAGCTTTCAGAGGGTATCTGGCCAGAAGAGCACTTCGTGCACTAAAGGGGTTGGTGAAGTTGCAAGCTTTGGTTAGGGGTCACAATGTTAGGAAGCAGGCAAAGATGACCCTTAGATGCATGCAGGCTTTGGTTAGAGTTCAAGCAAGGGTCCTTGACCAGCGCATAAGGTCTTCACTTGACGGTAGCAGAAAATCCACTTTCAGTGATACCGCCAGTGTTTGGGACTCTCGGTATCTTCAGGATATTTCAGATAGGAAATCAGTATCAAGAGAGGGGAGCAGCATTGCAGATGACTGGGATGAACGTCCACACACAGTTGAAGAAGTGAAGGCTATGTTGCAGCAGAGGAAGGAAGCTGCAATGAAGAGAGACAAGACCTTGTCCCACGCCTTTTCTCAACAGATTTGGAGGAATGGTAGGACATCATCAATTGGAAACGAAGATGAGTTGGAAGAGAGACCAAAATGGCTAGATCGGTGGATGGCCACAAAGCCATGGGAGAACAGAGGAAGAGCTTCAACTGATCAGAGAGACCCAATCAAGACTGTGGAGATTGACACATCTCAGCCATATTCATATCTAGGAACCAATTACAGAAGATCACATCCAAATTATCAATATAACCCAAACCACCATCAACCACAAAGGCATTCCATTGGTTCACCACTCCACAGATCTCACCAAAATGGATCCCTTCACCAGTCCCCTGCAACCCCTTCTCCTGCCAAATCAAGACCCATCCAAGTCCGGTCAGCAAGCCCTCGTTGCATCAGAGAAGACAGAAACTACCCCACTTCCCAAACACCAAGCTTGAGGTCAAATTACCATTACACTGGAAACTTGTACCAAAATGGAAGGGCTGCGGGAACTGGAAGTAGTAGTAGTAATGGTGCTACATTGCCGAATTACATGGCGGCAACGGAGTCTGCAAAGGCTCGAATCCGGTCACAAAGCGCGCCGAGGCAGAGGCCGTCGACACCAGAGAGGGACAGGGTTGGATCAGCAAAGAAAAGGCTTTCTTTTCCTGCTCCTGACCCTTATAGCGTGGGAGTGAGTTATGGAAATTACGGGCACAGTTTGAGGAGTCCAAGCTTCAAGAGTGTGAGTGGATCACACTTTGGGTTGGAGCAGCAGTCAAATTACTCCTCTTGCTGCACTGAAAGTCTTGGTGGTGGTGAGGTTTCTCCTTCTTCAACCGGTGACCTTAGGAGGTGGTTGAGATGA | 1629 | 0.4856 | MGKKGSGSSWLTAVKRAFRSPTKDSDKRSGRRREDCDQEEDEEKKREKRRWIFRKTHMSQEGVNNNNSTQQKLKHDVAAAGGVSRTDQDQKHALAVAVATAEAAMATAQAAVEVARLNKPASHAREHYAAVVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLDGSRKSTFSDTASVWDSRYLQDISDRKSVSREGSSIADDWDERPHTVEEVKAMLQQRKEAAMKRDKTLSHAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPNHHQPQRHSIGSPLHRSHQNGSLHQSPATPSPAKSRPIQVRSASPRCIREDRNYPTSQTPSLRSNYHYTGNLYQNGRAAGTGSSSSNGATLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYSVGVSYGNYGHSLRSPSFKSVSGSHFGLEQQSNYSSCCTESLGGGEVSPSSTGDLRRWLR | 542 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium5848g00007 | 542 | SMART | iq_5 | 125 | 147 | IPR000048 | GO:0005515 | |
| Vium5848g00007 | 542 | SMART | iq_5 | 148 | 169 | IPR000048 | GO:0005515 | |
| Vium5848g00007 | 542 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 478 | - | - | |
| Vium5848g00007 | 542 | Pfam | Protein of unknown function (DUF4005) | 388 | 491 | IPR025064 | - | |
| Vium5848g00007 | 542 | MobiDBLite | consensus disorder prediction | 19 | 49 | - | - | |
| Vium5848g00007 | 542 | MobiDBLite | consensus disorder prediction | 443 | 479 | - | - | |
| Vium5848g00007 | 542 | ProSiteProfiles | IQ motif profile. | 150 | 177 | IPR000048 | GO:0005515 | |
| Vium5848g00007 | 542 | FunFam | IQ-domain 11 | 125 | 176 | - | - | |
| Vium5848g00007 | 542 | MobiDBLite | consensus disorder prediction | 517 | 542 | - | - | |
| Vium5848g00007 | 542 | MobiDBLite | consensus disorder prediction | 302 | 317 | - | - | |
| Vium5848g00007 | 542 | MobiDBLite | consensus disorder prediction | 58 | 72 | - | - | |
| Vium5848g00007 | 542 | MobiDBLite | consensus disorder prediction | 318 | 382 | - | - | |
| Vium5848g00007 | 542 | Gene3D | - | 123 | 178 | - | - | |
| Vium5848g00007 | 542 | Pfam | IQ calmodulin-binding motif | 129 | 147 | IPR000048 | GO:0005515 | |
| Vium5848g00007 | 542 | Pfam | IQ calmodulin-binding motif | 153 | 169 | IPR000048 | GO:0005515 | |
| Vium5848g00007 | 542 | MobiDBLite | consensus disorder prediction | 302 | 412 | - | - | |
| Vium5848g00007 | 542 | ProSiteProfiles | IQ motif profile. | 126 | 154 | IPR000048 | GO:0005515 | |
| Vium5848g00007 | 542 | MobiDBLite | consensus disorder prediction | 395 | 412 | - | - | |
| Vium5848g00007 | 542 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium5848g00007 | Vium-Chr5848 | 76418 | 79429 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium5848g00007 | 10 | 542 | IQD Protein Family | AT4G00820 | 58.484 | 0.0 | 528 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium5848g00007 | - | - | gmx:100786729 | 951.814 |