Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium5848g00006 | ATGGGGAAGAAGGGAAGTGGTAGTTCGTGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACAGTGACAAAAGGAGTGGTAGAAGAAGAGAAGACTGTGATCAAGAAGAAGACGAAGAAAAGAAAAGGGAAAAGAGAAGATGGATTTTCAGGAAGACTCACATGAGTCAGGAAGGAGTGAACAACAACAACAGTACTCAACAAAAGTTGAAGCATGATGTGGCGGCAGCTGGTGGGGTTTCAAGGACAGACCAGGATCAGAAGCATGCACTTGCTGTGGCGGTGGCCACAGCAGAAGCTGCCATGGCGACCGCTCAGGCGGCCGTGGAGGTGGCAAGGTTGAACAAACCTGCTAGCCATGCAAGGGAGCATTATGCTGCTGTTGTGATCCAAACAGCTTTCAGAGGGTATCTGGCCAGAAGAGCACTTCGTGCACTAAAGGGGTTGGTGAAGTTGCAAGCTTTGGTTAGGGGTCACAATGTTAGGAAGCAGGCAAAGATGACCCTTAGATGCATGCAGGCTTTGGTTAGAGTTCAAGCAAGGGTCCTTGACCAGCGCATAAGGTCTTCACTTGACGGTAGCAGAAAATCCACTTTCAGTGATACCGCCAGTGTTTGGGACTCTCGGTATCTTCAGGATATTTCAGATAGGAAATCAGTAGTAAGTGAGAGGTCAAGAGAGGGGAGCAGCATTGCAGATGACTGGGATGAACGTCCACACACAGTTGAAGAAGTGAAGGCTATGTTGCAGCAGAGGAAGGAAGCTGCAATGAAGAGAGACAAGACCTTGTCCCACGCCTTTTCTCAACAGATTTGGAGGAATGGTAGGACATCATCAATTGGAAACGAAGATGAGTTGGAAGAGAGACCAAAATGGCTAGATCGGTGGATGGCCACAAAGCCATGGGAGAACAGAGGAAGAGCTTCAACTGATCAGAGAGACCCAATCAAGACTGTGGAGATTGACACATCTCAGCCATATTCATATCTAGGAACCAATTACAGAAGATCACATCCAAATTATCAATATAACCCAAACCACCATCAACCACAAAGGCATTCCATTGGTTCACCACTCCACAGATCTCACCAAAATGGATCCCTTCACCAGTCCCCTGCAACCCCTTCTCCTGCCAAATCAAGACCCATCCAAGTCCGGTCAGCAAGCCCTCGTTGCATCAGAGAAGACAGAAACTACCCCACTTCCCAAACACCAAGCTTGAGGTCAAATTACCATTACACTGGAAACTTGTACCAAAATGGAAGGGCTGCGGGAACTGGAAGTAGTAGTAGTAATGGTGCTACATTGCCGAATTACATGGCGGCAACGGAGTCTGCAAAGGCTCGAATCCGGTCACAAAGCGCGCCGAGGCAGAGGCCGTCGACACCAGAGAGGGACAGGGTTGGATCAGCAAAGAAAAGGCTTTCTTTTCCTGCTCCTGACCCTTATAGCGTGGGAGTGAGTTATGGAAATTACGGGCACAGTTTGAGGAGTCCAAGCTTCAAGAGTGTGAGTGGATCACACTTTGGGTTGGAGCAGCAGTCAAATTACTCCTCTTGCTGCACTGAAAGTCTTGGTGGTGGTGAGGTTTCTCCTTCTTCAACCGGTGACCTTAGGAGGTGGTTGAGATGA | 1641 | 0.4857 | MGKKGSGSSWLTAVKRAFRSPTKDSDKRSGRRREDCDQEEDEEKKREKRRWIFRKTHMSQEGVNNNNSTQQKLKHDVAAAGGVSRTDQDQKHALAVAVATAEAAMATAQAAVEVARLNKPASHAREHYAAVVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLDGSRKSTFSDTASVWDSRYLQDISDRKSVVSERSREGSSIADDWDERPHTVEEVKAMLQQRKEAAMKRDKTLSHAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPNHHQPQRHSIGSPLHRSHQNGSLHQSPATPSPAKSRPIQVRSASPRCIREDRNYPTSQTPSLRSNYHYTGNLYQNGRAAGTGSSSSNGATLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYSVGVSYGNYGHSLRSPSFKSVSGSHFGLEQQSNYSSCCTESLGGGEVSPSSTGDLRRWLR | 546 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium5848g00006 | 546 | SMART | iq_5 | 125 | 147 | IPR000048 | GO:0005515 | |
| Vium5848g00006 | 546 | SMART | iq_5 | 148 | 169 | IPR000048 | GO:0005515 | |
| Vium5848g00006 | 546 | MobiDBLite | consensus disorder prediction | 19 | 49 | - | - | |
| Vium5848g00006 | 546 | MobiDBLite | consensus disorder prediction | 447 | 483 | - | - | |
| Vium5848g00006 | 546 | Pfam | Protein of unknown function (DUF4005) | 392 | 495 | IPR025064 | - | |
| Vium5848g00006 | 546 | ProSiteProfiles | IQ motif profile. | 150 | 177 | IPR000048 | GO:0005515 | |
| Vium5848g00006 | 546 | FunFam | IQ-domain 11 | 125 | 176 | - | - | |
| Vium5848g00006 | 546 | MobiDBLite | consensus disorder prediction | 521 | 546 | - | - | |
| Vium5848g00006 | 546 | MobiDBLite | consensus disorder prediction | 58 | 72 | - | - | |
| Vium5848g00006 | 546 | MobiDBLite | consensus disorder prediction | 306 | 321 | - | - | |
| Vium5848g00006 | 546 | MobiDBLite | consensus disorder prediction | 322 | 386 | - | - | |
| Vium5848g00006 | 546 | Gene3D | - | 123 | 178 | - | - | |
| Vium5848g00006 | 546 | Pfam | IQ calmodulin-binding motif | 129 | 147 | IPR000048 | GO:0005515 | |
| Vium5848g00006 | 546 | Pfam | IQ calmodulin-binding motif | 153 | 169 | IPR000048 | GO:0005515 | |
| Vium5848g00006 | 546 | MobiDBLite | consensus disorder prediction | 306 | 416 | - | - | |
| Vium5848g00006 | 546 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 482 | - | - | |
| Vium5848g00006 | 546 | ProSiteProfiles | IQ motif profile. | 126 | 154 | IPR000048 | GO:0005515 | |
| Vium5848g00006 | 546 | MobiDBLite | consensus disorder prediction | 399 | 416 | - | - | |
| Vium5848g00006 | 546 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium5848g00006 | Vium-Chr5848 | 76418 | 79431 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium5848g00006 | 10 | 546 | IQD Protein Family | AT4G00820 | 58.065 | 0.0 | 523 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium5848g00006 | - | - | gmx:100786729 | 935.636 |