Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5843g00001 ATGATGAATTCACACAACCAACAGCTTTCCCTCTTATCTCTTTCTCTAGCACTTCTACTTCTCTCAGGTTTGAGAGTTGAGGCTAGGTTGCAACATCATGCGACCAGTTACCAAAAATTGTTTGTTTTTGGCGACTCCTATGTGGATACTGGAAACACGAGAATAGATCAACCTGGGTCGTGGAAAAACCCTTACGGCATAACTTTCCCCGGAAAACCTGCCGGAAGATTCTCGGACGGTAGAGTTCTAACAGACTACATTGCTAAGTTTTTGGGACTCAAATCGCCTCTTCCCTACAAATTTAGGAAATTGATTCCACAAAATTTGAAATACGGGATGAACTTTGCATATGGTGGTACTGGCGTGTTTGACACATCCTCCAAAAACCCAAACATGACAATCCAAATAGATTTCTTCAAGCAGTTGATCAAAGAAAATGTGTACACAGCTTCAGACCTCAGCAATTCTGTGGCACTTGTCTCTGTCGCAGGAAATGATTACAATTTCTACTTGGCAAGAAATGGCTCTATTCAGGGTTTTCCCTCTTTCATCGCCTCGGTGGTTAATCAAACTGCAATCAACTTGCTTCGCATCCAAAGTCTGGGAGTGAAGAAAATTGTTGTGGATGGTCTACAGCCACTTGGATGTCTTCCTGGAAACACAGCCTCATTATCATTCCAAAAATGTAACAGTACCTTCAATGACCTCGTACTGCTCCACAACAACTTATTGAACCAAGCTGTGACCAAGTTGAATCAACAAACCAAGAATCAAACAACATTCATCGTTCTTGATCTTTACGACAGTTTCTTGTCGGTGCTGAACAACCCATCTAACAATAACATCAAGGACGCATTCAAGCCTTGTTGCGTTGGTATAAGTAGCCAATATTCATGTGGAAGTGTGGATGAAAACAATGTTAAGAAATATAAGGTCTGTGATCATCCCAAATCAGCTTTCTTTTGGGACCTTTTGCATCCCTCTCAAGCTGGTTGGCTTGCCGTGTATAACGAGTTGCAAACCTCAAAGGCTCTTCAACAAATCCGATACTGA 1053 0.4179 MMNSHNQQLSLLSLSLALLLLSGLRVEARLQHHATSYQKLFVFGDSYVDTGNTRIDQPGSWKNPYGITFPGKPAGRFSDGRVLTDYIAKFLGLKSPLPYKFRKLIPQNLKYGMNFAYGGTGVFDTSSKNPNMTIQIDFFKQLIKENVYTASDLSNSVALVSVAGNDYNFYLARNGSIQGFPSFIASVVNQTAINLLRIQSLGVKKIVVDGLQPLGCLPGNTASLSFQKCNSTFNDLVLLHNNLLNQAVTKLNQQTKNQTTFIVLDLYDSFLSVLNNPSNNNIKDAFKPCCVGISSQYSCGSVDENNVKKYKVCDHPKSAFFWDLLHPSQAGWLAVYNELQTSKALQQIRY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5843g00001 350 Gene3D SGNH hydrolase 26 346 IPR036514 -
Vium5843g00001 350 PANTHER OSJNBB0059K02.9 PROTEIN 13 348 - -
Vium5843g00001 350 Pfam GDSL-like Lipase/Acylhydrolase 40 336 IPR001087 GO:0016788
Vium5843g00001 350 SUPERFAMILY SGNH hydrolase 39 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5843g00001 Vium-Chr5843 6974 11084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5843g00001 18 345 Pollen Coat Proteome AT1G75930 29.060 8.30e-34 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5843g00001 - - gmx:100800932 523.857