Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5839g00016 ATGGATCCTCCTCTCATCACTGACTCCACATTCTCCTCTGCTTACACCCTCGCCGATATTTGGCTCGGAACCTCCCCTTTTCCCCCTTCCGACCACCATTTCTCCGAGAATGACTCTGGTAGCAATAAACGGATGAAGGTGGAAGGGTGCAGTGTTAAAAATGATGGTTTCAAAGATGAAGCAGAAACAAGTTCTGTGAGTGGTAACAAGTCAAGTGAACAAAGCACTGTACCTTGTGAGGCACCTAAGCAAGACTATATTCACGTGAGAGCAAGAAGGGGCCAAGCTACCGATAACCACAGTCTAGCAGAAAGAGCAAGAAGAGAAAAGATCAGTGAGAGAATGAGAATTCTTCAGGATTTGGTTCCAGGGTGTAACAAGGTAATTGGTAAAGCACTAGTCCTAGATGAGATAATCAATTACATACAGTCGCTGCAGCGTCAGGTTGAGCTTGAAGCAGTTAATTCAAGGATGAACATGAGCCCTAACACAGATGGGTTTCCTTTAAAAGATGTTGGTGGTACTGGAATGGTATTTGGATCACAAGCAGCAACAGGGTATGCTCAGGGATCACATCCTGGATGCCTGCATATGCAGATAGGTGGTGGTTTGAGAGAACAACATGATTCAGAGGTGTCTCAAGGGAATGAAACATCATTTGATAGGGCTTCTTCATCATACTCAGCCTGCTCTTCCATCATTCTCTGA 708 0.4492 MDPPLITDSTFSSAYTLADIWLGTSPFPPSDHHFSENDSGSNKRMKVEGCSVKNDGFKDEAETSSVSGNKSSEQSTVPCEAPKQDYIHVRARRGQATDNHSLAERARREKISERMRILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVELEAVNSRMNMSPNTDGFPLKDVGGTGMVFGSQAATGYAQGSHPGCLHMQIGGGLREQHDSEVSQGNETSFDRASSSYSACSSIIL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5839g00016 235 Pfam Helix-loop-helix DNA-binding domain 99 146 IPR011598 GO:0046983
Vium5839g00016 235 CDD bHLH_AtBPE_like 85 165 - -
Vium5839g00016 235 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 38 202 IPR024097 GO:0006355
Vium5839g00016 235 MobiDBLite consensus disorder prediction 36 60 - -
Vium5839g00016 235 MobiDBLite consensus disorder prediction 61 79 - -
Vium5839g00016 235 Gene3D - 92 164 IPR036638 GO:0046983
Vium5839g00016 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 145 IPR011598 GO:0046983
Vium5839g00016 235 MobiDBLite consensus disorder prediction 32 83 - -
Vium5839g00016 235 SMART finulus 101 151 IPR011598 GO:0046983
Vium5839g00016 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 151 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5839g00016 Vium-Chr5839 71448 80896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5839g00016 40 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 66.906 7.24e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium5839g00016 HLH 5.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5839g00016 - - vra:106758689 420.239