Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5839g00012 ATGCCTCTCTCCTCCGCCTCCGCCGCAGCCCCTCACTCTGCCTCCTCCGCCGAGATCATGCTCTTCGGAGTCAGAGTCGTCGTGGACTCCATGAGGAAGAGCGTCAGCATGAACAACCTCTCCCAGTACGATCACCATCGCGATACCGCCGCCGCCAAAGATGACGCCGTTGCCGCCGGCTACGCCTCCGCCGATGATGCCGCTCCGAACAACTCCGGGAAAAACCGCGACCGCAAGCGAGGGATTCCATGGACGGAGGAAGAGCACAAGCTGTTCTTGGTTGGGTTGCAGAAAGTGGGGAAAGGTGACTGGAGAGGAATCTCAAGGAACTATGTCAAGACACGGACTCCAACTCAAGTTGCTAGCCATGCTCAAAAGTACTTTCTCCGCCGTACCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTCGACATAACCACCGATTCGGTCTCTACAACCCCGATGGAAGGACAGATTCAGTATCAAGATAATGTGTCTCTTCTGCATCCCATGTACCCTGTTACCCCTGAAGGAAGCAACATGAACGGATTTTCCAAGTTGCCTATGTATTCGAAGGACATTGGTACTGGAGCTATGTCAGCTCAAGCTGGGAATCCAATGAAAATACTTACTTTGGGACAAGGAAATGTGGAGCAGAATGGGCCTAGTACTAAGCTAGTTTGTACAACAGCCCCTAATATTGTTCCAGATTATAAAGGCTCCACAGCGTCTGATATCACCGCCACCAGTTTAAGTTCACTTGATCCACCAACACTGTCTCTCGGGTTATCTTTGTCATCTAGTCAAAGACAAACCTCATCAATACATTCAGCTTTTCATTCACTGTCGTGTTTCAACAACGGAGATAGCTTCATAACCGTTGCTTAG 891 0.5073 MPLSSASAAAPHSASSAEIMLFGVRVVVDSMRKSVSMNNLSQYDHHRDTAAAKDDAVAAGYASADDAAPNNSGKNRDRKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDSVSTTPMEGQIQYQDNVSLLHPMYPVTPEGSNMNGFSKLPMYSKDIGTGAMSAQAGNPMKILTLGQGNVEQNGPSTKLVCTTAPNIVPDYKGSTASDITATSLSSLDPPTLSLGLSLSSSQRQTSSIHSAFHSLSCFNNGDSFITVA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5839g00012 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 132 IPR017930 -
Vium5839g00012 296 SMART sant 80 130 IPR001005 -
Vium5839g00012 296 CDD SANT 83 128 IPR001005 -
Vium5839g00012 296 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Vium5839g00012 296 PANTHER TRANSCRIPTION FACTOR KUA1 16 215 - -
Vium5839g00012 296 Gene3D - 82 134 - -
Vium5839g00012 296 SUPERFAMILY Homeodomain-like 78 132 IPR009057 -
Vium5839g00012 296 ProSiteProfiles SANT domain profile. 84 132 IPR017884 -
Vium5839g00012 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 79 130 IPR006447 GO:0003677
Vium5839g00012 296 ProSiteProfiles Myb-like domain profile. 76 128 IPR001005 -
Vium5839g00012 296 FunFam transcription factor MYB1R1 82 133 - -
Vium5839g00012 296 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5839g00012 Vium-Chr5839 61847 65143 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium5839g00012 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5839g00012 - - gmx:778056 394.815