Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5839g00002 ATGTCGGCCTCCACTCATGCAATTGCAGAGGCTGTGGTTGCCACAGCTGGGGCTATGCTACTTATTGCTGCTGTTTTTGTTTACTTCTTTCACAAATTTGTGATTTCTAGATACCGCCAGAGAAACAAAATTGGAGCAAGTTTGCTTCGAGAATCAGGAGTGAACCTTGAGTATATAAACAAAGTTGGTGGCAATGTGAAGGGATTAATTGTTGAAGAAAATGGGGTTGATGTTCTTTATGTGGTGGACACAGAAAGAAGACCATTGATAACTGGATTCCAAAATAGTATACTCAATCCGAGTTTCGAACATGATGAAGACGAAAAGAGAATAGATATAATGGTCCAAAGGTCCAAACTCTTCAAGCCTGAAATTCCACAGCCATGTCAATCTCCAAGCTTGGTTGTTCATGAGAATCATCAAGTGCTTAAGCCAGAATCACAAACACCATCAGTTTCAACATCACTAACACCAACACAAAACCTCCCACAATCACCTCAGCCAGCACCTCCACCCCAACCACCACCACCACAATCTTCACCAATTATTCTTGAGAACAAGAAAACTCAACCACCACCACCTCCTCCTCCTCCAACTCGTCCTCCACCACCACCACCAGGTCCACCTCCTCTTCCAAAGGCCAGTGGCTTCATTTCGTCACTGAAACCCCCACCTGCACCCAAAGGGAAAACAAACATAAGAAGCACCAAAGAGGGTTTGGCAGGGGAGAGTTCAAGAGAAAAGGTTGCTGGCCAAACAAGGCTGAAGCCTCTACACTGGGATAAGGTTGTAGCAAATGTTGATCATTCAACGGTGTGGGATCAGATCAATGATGGCTCTTTCAGGTTTGATGATGAACTGATGGAGTCACTCTTTGGGTATTCAAGTAGCTATAAAACACAAGAAAGAAACAGAACTCTTTCCACTTTGGCCAAGTCCAATTCAAATGCACCAACTCAAATATTCATTCTTGACCCAAGAAAATCTCAAAACACTGCCATTGTGCTAAGATCACTTGCCATTTCTCGCAAGGGAATCTTGGATGCTGTTCTTGATGGTCAAGGTCTAAGTGTTGAGACGCTTGAAAGACTCACTAAAATAGCTCCCACCCAAGAAGAGGAAGCTAAAATCATCCAATTCAGTGGCAACCCAGATCAGCTTGCTGATGCCGAGTCTTTCCTGCACTACATTCTTAAAGCAGTTCCAACAGCATTCAACCGTTTGAAAGCGATGCTTTTCAGGTCGAGTTATGATTGTGAAGTTCTTCAGCACAAGGAACAACTACAAGCGCTTGAAATGGGTTGCAAGGAACTGAGAACTAGTGGTCTGTTTTTGAAACTCCTTGAGGCCATTCTCAAGGCTGGGAATCGAATGAATGCTGGAACTTCAAGAGGCAACGCACAAGGTTTCAACCTGAGTGCTCTTAGAAAACTTTCTGATGTGAAAAGCACAGATGGGAAGACCAGTTTGCTTCATTTTATAGTAGAACAAGTGGTTCAGTCAGAAGGAAAAAGACAAGCTCTCTATCGCAAGCACAAACTTCACACAAGCAATGTTGAAGCAAACAATGTGAATAGAGCTTATTCATATAGACTGATACAACAAGAGGAAGATAAAGAACACACAATGCTTGGTTTGCAAGTGTTACGTGGGCTAAGTGATGAGTTATCTGAAGCAAAGAAAGCAGCTAGTATTGAGTATCACAATTTTATCACAATGTGTTCCACTCTGAATGCTCATGTTACAGAAATTAGACAGATTGTAACGTGTTGTGGCTACACCAGGAGTGGTGGATTTATCAACGAAATGAAAGGGTTCTTGGAGGAATGTGAGGGAGAACTTGAGGTGGTGAAAGAGGAGCAGACAAGGATCATGGAGCTTGTGAAGAAAACAAACGATTACTATCTAGCAGGAGCATCCAAAGACAACATGGTAAACCCCTTTCAACTGTTTGTTATTGTAAAGAATTTTGTTGACATGGTTGATCAGGCTTGCATAGAACTAAAAAGGAAGTTGGAAAAGAAGAATTTGGGAGGAGAAGCTGTGTCAACAACACCACCTTTGTCACCATCAAAGAGGGCACCACTGAGATTCCCTAACTTTGATTTGTATTTTCTGTCAAATGTGTCAGAAACTTCATCTTCTAGCCAGTCAGAAGATGATTTCTGA 2169 0.4232 MSASTHAIAEAVVATAGAMLLIAAVFVYFFHKFVISRYRQRNKIGASLLRESGVNLEYINKVGGNVKGLIVEENGVDVLYVVDTERRPLITGFQNSILNPSFEHDEDEKRIDIMVQRSKLFKPEIPQPCQSPSLVVHENHQVLKPESQTPSVSTSLTPTQNLPQSPQPAPPPQPPPPQSSPIILENKKTQPPPPPPPPTRPPPPPPGPPPLPKASGFISSLKPPPAPKGKTNIRSTKEGLAGESSREKVAGQTRLKPLHWDKVVANVDHSTVWDQINDGSFRFDDELMESLFGYSSSYKTQERNRTLSTLAKSNSNAPTQIFILDPRKSQNTAIVLRSLAISRKGILDAVLDGQGLSVETLERLTKIAPTQEEEAKIIQFSGNPDQLADAESFLHYILKAVPTAFNRLKAMLFRSSYDCEVLQHKEQLQALEMGCKELRTSGLFLKLLEAILKAGNRMNAGTSRGNAQGFNLSALRKLSDVKSTDGKTSLLHFIVEQVVQSEGKRQALYRKHKLHTSNVEANNVNRAYSYRLIQQEEDKEHTMLGLQVLRGLSDELSEAKKAASIEYHNFITMCSTLNAHVTEIRQIVTCCGYTRSGGFINEMKGFLEECEGELEVVKEEQTRIMELVKKTNDYYLAGASKDNMVNPFQLFVIVKNFVDMVDQACIELKRKLEKKNLGGEAVSTTPPLSPSKRAPLRFPNFDLYFLSNVSETSSSSQSEDDF 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5839g00002 722 PANTHER FORMIN-RELATED 5 679 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vium5839g00002 722 Pfam Formin Homology 2 Domain 248 661 IPR015425 -
Vium5839g00002 722 MobiDBLite consensus disorder prediction 143 251 - -
Vium5839g00002 722 SMART it6_source 245 676 IPR015425 -
Vium5839g00002 722 Coils Coil 600 620 - -
Vium5839g00002 722 MobiDBLite consensus disorder prediction 163 213 - -
Vium5839g00002 722 MobiDBLite consensus disorder prediction 143 162 - -
Vium5839g00002 722 ProSiteProfiles Formin homology-2 (FH2) domain profile. 245 687 IPR015425 -
Vium5839g00002 722 Gene3D Formin, FH2 domain 267 681 IPR042201 -
Vium5839g00002 722 SUPERFAMILY Formin homology 2 domain (FH2 domain) 193 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5839g00002 Vium-Chr5839 13304 16061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5839g00002 8 720 FH2 protein (formin) Gene Family AT1G70140 39.378 8.81e-159 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5839g00002 - - gsj:114409782 1154.81