Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium581g00001 ATGGTCAAATATGTAGGAGTTTCTATAAGCTTTGGATCTATCATTTTACTTCTTATTTTATGGCGGGTGTTCAAGGTTACAAAAAAAACCATAGTGAAGAAATACAGAGAAAATTTCTTCAAAAGAAATGGAGGGTTATTATTACAACAAAAATTGTCTTCTGGTGAAGTTAATGTGGATAAAGTTAAATTATTCAGTTTACAAGAATTGGAAAAGGCCACTGATAACTTTAATACAAATAGAGTACTTGGAAAAGGAGGTCAAGCTACTGTTTACAAAGGCATGTTGATAGATGGAACAATTATTGCAGTGAAAAAATTTAAGGTCCAAGGAAAAATTGAAGAATTTATCAATGAATTCGTCATTCTTTCACAAATTAACCATAGGAACGTGGTTAAGTTGTTAGGAAGTTGTTTTGAGACTAAAATTCCTTTGCTTGTCTATGAATTCATTCCTAATGGTAATCTTTTCGAGTACTTACATCAACAAAATGAGGATATGCCATTGACATGGGACATGCGTTTGAGAATTGCCATTGAAGTTGCAGGAGCTTTATTTTACTTGCACTCTGCCGCTTCTCAACCTGTTTATCATAAAGACATCAAGTCAACAAATATATTGTTGGATGAAAAGTATAGGGCAAAAGTAGCAGACTTTGGTACATCAAGAATGATTTCCATTGATGTTACTCACCTTACTACAGTAGTTCAAGGAACATTTGGATACTTTGACCCTGAATTTTTTCAAACTAGTCAATTCACAGAAAAAAGTGATGTTTATAGTTTTGGAGTAGTTCTTGTTGAACTTTTAACAGGACAAAAGCCAATAACCCTTCTAAGTCAAGAGGAAGCCAAAAGTTTAGCTTCATATTTCATCATGTGTGTGGAGGAAAATTGTGTTTTTGATATTATTGATGAAAGAGTGATGAAGGAAGCGGAGAAATGCCATATTATGAAAGTTGTCAATCTTGCAAGTCAATGTTTAGAGTTGAACGGAAAGAGGCGACCAACTATGAGGGAAATCACATTGGAATTAGAAGGTATTCGAAAGTTGGAAAAAGATTCTAATGCACAAGAAGGACATGGAGACTTTGTTAGAGGTGAAGACTATCAATCTTTGGATGATAACTCTATTCTCTCAGAAATAATGTCAACATGTTGA 1161 0.3368 MVKYVGVSISFGSIILLLILWRVFKVTKKTIVKKYRENFFKRNGGLLLQQKLSSGEVNVDKVKLFSLQELEKATDNFNTNRVLGKGGQATVYKGMLIDGTIIAVKKFKVQGKIEEFINEFVILSQINHRNVVKLLGSCFETKIPLLVYEFIPNGNLFEYLHQQNEDMPLTWDMRLRIAIEVAGALFYLHSAASQPVYHKDIKSTNILLDEKYRAKVADFGTSRMISIDVTHLTTVVQGTFGYFDPEFFQTSQFTEKSDVYSFGVVLVELLTGQKPITLLSQEEAKSLASYFIMCVEENCVFDIIDERVMKEAEKCHIMKVVNLASQCLELNGKRRPTMREITLELEGIRKLEKDSNAQEGHGDFVRGEDYQSLDDNSILSEIMSTC 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium581g00001 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vium581g00001 386 FunFam Wall-associated receptor kinase 2 47 150 - -
Vium581g00001 386 SUPERFAMILY Protein kinase-like (PK-like) 58 345 IPR011009 -
Vium581g00001 386 Pfam Protein tyrosine and serine/threonine kinase 79 344 IPR001245 GO:0004672|GO:0006468
Vium581g00001 386 Gene3D Phosphorylase Kinase; domain 1 48 150 - -
Vium581g00001 386 Gene3D Transferase(Phosphotransferase) domain 1 151 369 - -
Vium581g00001 386 ProSiteProfiles Protein kinase domain profile. 77 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium581g00001 386 FunFam Wall-associated receptor kinase 2 151 365 - -
Vium581g00001 386 SMART serkin_6 77 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium581g00001 386 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 16 354 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium581g00001 Vium-Chr581 32 1192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium581g00001 5 369 Receptor kinase-like Gene Family AT1G69730 58.696 4.17e-153 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vium581g00001 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium581g00001 - - vum:124846131 735.332