Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5816g00002 ATGGTGCCCAATTTTTTCATTTCAAGATTAGTTGCATCATCATCGTTCACTGGCTACAAGGGTAGTCATCTTCTATTGGGTTCTCTGTTTCCATGCAAACACACTGCTTCACTTGTTTTCTTCAATTATTTCACTTCAGACACTTCCTCTGATTCTAAATCAGATGGAAAGCAACACAAAGGTTCCACCTTTACTGTGTCCGACCTCATCAACTCATGTGGGATGTCCCAAACTCTGGCTAGGGAACTCTCCAACAGGGTGAATTTGAAAACCCCAGATGGCCCAAATGCTGTCATTGATATCCTCAGCAACTATGGGTTCTCAAAATCCCAGCTTGCCAAGCTTGTGATGAGACATCCTTCCGTGCTATTTACAAATGTAGAGGATACCCTTTTGCCTAAACTCGAGTTCTTTCGTTCTATTGGGCTGTCCAACACTGACATACCTAAGATCCTGATTGCCAACCATGGTATCTTGAAGAGGCACTTGGAAAACTGCATCATCCCTCGCTATGAGATCCTAAAGAGTGTAGTTCTTGCTGATCGGGAAGTTGTTAGAGCTATTAAAAATGCCCCACTTGGTTTTGTGTATGGTGACTTAATGAATAGGTTGGTTCCAAACATTGACATTTTGAGGGAATGTGGTGTGTCCCAGGCTTCCATCACTCACCTGGTGACTAATTCTCTGTCTGCAGCATATGTGGAGCATTCCAGGTTTGTGGAAGCTATCAAGACAGCTAAGGAAATTGGATTTAGCCCTTTGAAAATGGACTTTGTTGTTGCTATTCACGTGCTTGTAACTATGAGGAAAGAAGTGTGGGAGTCAAGGTTTGAGGTTTATGAAAGGTGGGGCTGGAACCGGGAAATGGCTCTTCGAGCATTTAGGAAGTTTCCCAGTTTTATGAAGTTTTCAGGGGAGACATTTTCCAGAAAGATGAGTTTCCTTGTGAAGGATATGGGTTGGTCATCAGAAGCTATTGCTGAATATCCTCTAGTTGTAGCCTACAGCTTGGAGAAGAGGATTATTCCTAGATTCTCTGTAATAAAAATCTTGAAATCAAAAGGTCTCCTTGAGAAAAACGTGCACTTTAGTTCCATTATTTGCACAACTGAGGAAAAGTTCTTGGAGAAATTTGTCGTCAATTTTCAGAATGTTTTGCCCCTCTTACCAGACCTCTACAGAGGTTTGCTCAATCAATCTAATGTAGTGTAG 1212 0.4191 MVPNFFISRLVASSSFTGYKGSHLLLGSLFPCKHTASLVFFNYFTSDTSSDSKSDGKQHKGSTFTVSDLINSCGMSQTLARELSNRVNLKTPDGPNAVIDILSNYGFSKSQLAKLVMRHPSVLFTNVEDTLLPKLEFFRSIGLSNTDIPKILIANHGILKRHLENCIIPRYEILKSVVLADREVVRAIKNAPLGFVYGDLMNRLVPNIDILRECGVSQASITHLVTNSLSAAYVEHSRFVEAIKTAKEIGFSPLKMDFVVAIHVLVTMRKEVWESRFEVYERWGWNREMALRAFRKFPSFMKFSGETFSRKMSFLVKDMGWSSEAIAEYPLVVAYSLEKRIIPRFSVIKILKSKGLLEKNVHFSSIICTTEEKFLEKFVVNFQNVLPLLPDLYRGLLNQSNVV 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5816g00002 403 Gene3D Transcription termination factor 3, mitochondrial 69 197 IPR038538 -
Vium5816g00002 403 Gene3D Transcription termination factor 3, mitochondrial 198 385 IPR038538 -
Vium5816g00002 403 FunFam Mitochondrial transcription termination factor-like 163 386 - -
Vium5816g00002 403 SMART mt_12 185 217 IPR003690 GO:0003690|GO:0006355
Vium5816g00002 403 SMART mt_12 256 286 IPR003690 GO:0003690|GO:0006355
Vium5816g00002 403 SMART mt_12 291 322 IPR003690 GO:0003690|GO:0006355
Vium5816g00002 403 SMART mt_12 323 357 IPR003690 GO:0003690|GO:0006355
Vium5816g00002 403 SMART mt_12 113 144 IPR003690 GO:0003690|GO:0006355
Vium5816g00002 403 SMART mt_12 149 180 IPR003690 GO:0003690|GO:0006355
Vium5816g00002 403 PANTHER CGI-12 PROTEIN-RELATED 62 380 IPR003690 GO:0003690|GO:0006355
Vium5816g00002 403 Pfam mTERF 267 375 IPR003690 GO:0003690|GO:0006355
Vium5816g00002 403 Pfam mTERF 99 306 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5816g00002 Vium-Chr5816 4821 6378 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium5816g00002 mTERF 6.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5816g00002 K15031 - gmx:100786641 612.453