Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5815g00010 ATGGAGGGGATGGCTCCAAATTCATGTGCAAGGCCAGGTTTAGAGAAGAAAGCAAGACCACAAGAGCAACTGAATTGTCCAAGGTGCAATTCAACTAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAGCCAAGATACTTCTGTAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCGGTTGGAGGTGGTTCAAGAAAGAACAAGAAGGTCACTTCAGGAGGAGCAGGAGCCTCGGCTTCATCATCTTCATCGTCATCATCAAAGATTCCTGACCTAAATCCCCCAAACCTCTCAGCTCTCTCTTCACAAAACCCTAAAATATTACATGGTGGCCAGGATCTCAACCTGGCTTTCCCAGCCATGGACAAGTATCATCATCATCATGGCATCTCCCCTTATGTCGAGATGCAAAACAGTGACAGCACCACTCATCATCACCAAAACTCTCCTTCTTGTTCTGCTGCTCCAACCTCTCTTTCGGCTCTTGAGCTGCTAAGGTCCAGCATGGCATCTAGGGGTTTGAACCCTTATGCTCCTTCTTCCTTGATGCCAAACTCAGCAAACAACAATGCCCTTTACCCATCAGGGTTTCCCATGCAAGAAGTCAAACCAAGCCTCAGCTTTTCCTCAGTTGATGGGATGGGAAATAGATCATACGATCATCAGGTCCAAGAGAGGGGTGGCAGAGTTTTGTTCCCTTTTGGAGATGTCAATAAGCAGCTTTCTGCTGCAGGATCAGCTGAAGTGGAACACGGTAAAGAACAACAGCAACAGCATCAACAAGGAAACTCAACTGGATATTGGACTGGAATGATTGGTGAAGGGACATGGTAA 861 0.4623 MEGMAPNSCARPGLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTSGGAGASASSSSSSSSKIPDLNPPNLSALSSQNPKILHGGQDLNLAFPAMDKYHHHHGISPYVEMQNSDSTTHHHQNSPSCSAAPTSLSALELLRSSMASRGLNPYAPSSLMPNSANNNALYPSGFPMQEVKPSLSFSSVDGMGNRSYDHQVQERGGRVLFPFGDVNKQLSAAGSAEVEHGKEQQQQHQQGNSTGYWTGMIGEGTW 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5815g00010 286 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Vium5815g00010 286 MobiDBLite consensus disorder prediction 65 115 - -
Vium5815g00010 286 MobiDBLite consensus disorder prediction 265 280 - -
Vium5815g00010 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 189 IPR045174 GO:0003700|GO:0006355
Vium5815g00010 286 MobiDBLite consensus disorder prediction 252 286 - -
Vium5815g00010 286 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Vium5815g00010 286 MobiDBLite consensus disorder prediction 1 25 - -
Vium5815g00010 286 MobiDBLite consensus disorder prediction 80 115 - -
Vium5815g00010 286 MobiDBLite consensus disorder prediction 143 164 - -
Vium5815g00010 286 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5815g00010 Vium-Chr5815 24498 26622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5815g00010 16 286 C2C2-Dof Transcription Factor Family AT3G61850 48.973 8.33e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium5815g00010 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5815g00010 - - gmx:778110 460.299