Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5815g00008 ATGAAGTTGATGGAATTGAAGTTGCTTGGAATCAAATATCGCAAGAAGCATAAATATGTTGAAATGAAAGCTATAAAAGGTTGGGCCAGGCAGATTCTTCATGGCTTACTATATCTTCATAGTCACAAGCCACCCATTATTCATAGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCAGGGTGAAGTTAAGATAGGGGATCTTGGTTTGGCAATTGTCATGCAACAACCTACCGCCCGAAGTGTTATTGGAACTCCTGAGTTTATGGCTCCAGAACTATATGAAGAGTCATACACAGAACTGGTTGACATCTATTCTTTTGGGATGTGCATATTGGAGATGGTCACTTTTGAGTATCCCTATGCCGAATGCAAAAATCCAGCTCAAATCTTTAAGAAAGTTACCTCAGGCATCAAACCTGCTTCTCTTAATAAGGTGAGTGATCCTCAAATTAGGGAGTTTATTGAGAAATGTTTGGTTCCAGCATCTGAGAGATTGTCAGCAGAGGAGCTTCTGAAAGATCCATTTCTACAAGTTGAGAATTCAAAGGATCCCGTCCTTTATCCTTTACAACCACCTAGAAGAACTCTGAGAGCGTACTCATTCAAGTCTAGTTCTCATTCTATGGACTTGGATGGTGACTACAAACAGTTTTCTATGAGTATCTGTTCCGAAAGCAACCAAGAAAGCCCATATTGTCCTGTTTTTGAGGTTCAGAGGGCAAATATTAACAATGAGTTTAGGTTGAAAGGGACTAAAAATGATGATAACTCGGTATCATTGACCTTGCGTATTGCTGATACATGTGCAGGTCGAGTGAGGAACATACATTTTCTGTTTTACCTTGATTCAGATACCGCAGTCTCTGTGGCCACAGAGATGGTTGAACATTTGGAGCTGGCAGATCACGATGTACCTTTCATAGCTGAGCTTATTGATTATTTGATAATGAAACTTCTCCCTTGGTGGAATCCTTCGCATGATCGTTGGGCATGTGGTGAAATAAATCCTAATATAGATGCCCAAAACTTCATGGGATGGCCATGGGCTTCTGCCCTACCAAGTCTTCCCTCTGATTTGGCTATTGAGGAGGATGGCTACTCTGGGATTGATACAACCCCCAAAGAAGATTTTGTGGCAGCCGAGAACAGCTTAACAGAAAGTGGTGATAAGGCTACTTTCGAGGGTGATTATCATTCACAAAGATCTGAAGCTTCTGAGGTAGTTGTTGAGAATGCTTCTATGAAAGATGACAATTGTCATTATTCCAGTGTTGATGCAAGCTCTAAGTGCTTAAGTAGTAGGTCCATCTCTGAACTTGATCTTGGGGATGAATATTTTGAGGACTGTAAATTGCAACAAGAAAATTATTCTTCTGGGGAAGAAGTTGTTATAAATGAATACCCAGCGAACTCGGGGTCAGTTCTTGGAACATCTACTAATGTTGGGAGCACAAGAAGTAGCTGTTCTTATGTGTCTTCATCAGTAGAGGAGATTGATCTTGAGCTACAGTTTGAACTTGCTGTAATTGAGACTCACTATCAGCATTGGATTGATGAACTTAACAAAATGAAGTTGGAGGCATTAGAATCCACCAGAAGGAGATGGATGGCCAAGAAGAAACTGGCTGTTCGGTGA 1644 0.4069 MKLMELKLLGIKYRKKHKYVEMKAIKGWARQILHGLLYLHSHKPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEESYTELVDIYSFGMCILEMVTFEYPYAECKNPAQIFKKVTSGIKPASLNKVSDPQIREFIEKCLVPASERLSAEELLKDPFLQVENSKDPVLYPLQPPRRTLRAYSFKSSSHSMDLDGDYKQFSMSICSESNQESPYCPVFEVQRANINNEFRLKGTKNDDNSVSLTLRIADTCAGRVRNIHFLFYLDSDTAVSVATEMVEHLELADHDVPFIAELIDYLIMKLLPWWNPSHDRWACGEINPNIDAQNFMGWPWASALPSLPSDLAIEEDGYSGIDTTPKEDFVAAENSLTESGDKATFEGDYHSQRSEASEVVVENASMKDDNCHYSSVDASSKCLSSRSISELDLGDEYFEDCKLQQENYSSGEEVVINEYPANSGSVLGTSTNVGSTRSSCSYVSSSVEEIDLELQFELAVIETHYQHWIDELNKMKLEALESTRRRWMAKKKLAVR 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5815g00008 547 FunFam probable serine/threonine-protein kinase WNK9 9 184 - -
Vium5815g00008 547 SMART serkin_6 3 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5815g00008 547 Pfam Protein kinase domain 14 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5815g00008 547 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 262 318 IPR024678 GO:0004674|GO:0005524
Vium5815g00008 547 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 424 - -
Vium5815g00008 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 46 58 IPR008271 GO:0004672|GO:0006468
Vium5815g00008 547 Gene3D Transferase(Phosphotransferase) domain 1 11 185 - -
Vium5815g00008 547 ProSiteProfiles Protein kinase domain profile. 1 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5815g00008 547 SUPERFAMILY Protein kinase-like (PK-like) 13 235 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5815g00008 Vium-Chr5815 8493 11260 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5815g00008 22 325 MAP Kinase Kinase Kinase AT1G49160 60.759 6.57e-126 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium5815g00008 Pkinase 2.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5815g00008 K08867 - gmx:100809602 856.67