Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5815g00006 ATGCGTTCGGGACCAGGGAGCCTCAGGATTTTGAGGACGAGTTTGCGGAGAAAGATCCAACCGGGCGGTATACAAGGTATACTGAAGTCTTGGGAAGGGGTGCCTTCAAAACTGTTTATAGGGCCTTTGATGAAGTTGATGGAATTGAAGTTGCTTGGAATCAAATATCGCAAGAAGCATAAATATGTTGAAATGAAAGCTATAAAAGGTTGGGCCAGGCAGATTCTTCATGGCTTACTATATCTTCATAGTCACAAGCCACCCATTATTCATAGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCAGGGTGAAGTTAAGATAGGGGATCTTGGTTTGGCAATTGTCATGCAACAACCTACCGCCCGAAGTGTTATTGGAACTCCTGAGTTTATGGCTCCAGAACTATATGAAGAGTCATACACAGAACTGGTTGACATCTATTCTTTTGGGATGTGCATATTGGAGATGGTCACTTTTGAGTATCCCTATGCCGAATGCAAAAATCCAGCTCAAATCTTTAAGAAAGTTACCTCAGGCATCAAACCTGCTTCTCTTAATAAGGTGAGTGATCCTCAAATTAGGGAGTTTATTGAGAAATGTTTGGTTCCAGCATCTGAGAGATTGTCAGCAGAGGAGCTTCTGAAAGATCCATTTCTACAAGTTGAGAATTCAAAGGATCCCGTCCTTTATCCTTTACAACCACCTAGAAGAACTCTGAGAGCGTACTCATTCAAGTCTAGTTCTCATTCTATGGACTTGGATGGTGACTACAAACAGTTTTCTATGAGTATCTGTTCCGAAAGCAACCAAGAAAGCCCATATTGTCCTGTTTTTGAGGTTCAGAGGGCAAATATTAACAATGAGTTTAGGTTGAAAGGGACTAAAAATGATGATAACTCGGTATCATTGACCTTGCGTATTGCTGATACATGTGCAGGTCGAGTGAGGAACATACATTTTCTGTTTTACCTTGATTCAGATACCGCAGTCTCTGTGGCCACAGAGATGGTTGAACATTTGGAGCTGGCAGATCACGATGTACCTTTCATAGCTGAGCTTATTGATTATTTGATAATGAAACTTCTCCCTTGGTGGAATCCTTCGCATGATCGTTGGGCATGTGGTGAAATAAATCCTAATATAGATGCCCAAAACTTCATGGGATGGCCATGGGCTTCTGCCCTACCAAGTCTTCCCTCTGATTTGGCTATTGAGGAGGATGGCTACTCTGGGATTGATACAACCCCCAAAGAAGATTTTGTGGCAGCCGAGAACAGCTTAACAGAAAGTGGTGATAAGGCTACTTTCGAGGGTGATTATCATTCACAAAGATCTGAAGCTTCTGAGGTAGTTGTTGAGAATGCTTCTATGAAAGATGACAATTGTCATTATTCCAGTGTTGATGCAAGCTCTAAGTGCTTAAGTAGTAGGTCCATCTCTGAACTTGATCTTGGGGATGAATATTTTGAGGACTGTAAATTGCAACAAGAAAATTATTCTTCTGGGGAAGAAGTTGTTATAAATGAATACCCAGCGAACTCGGGGTCAGTTCTTGGAACATCTACTAATGTTGGGAGCACAAGAAGTAGCTGTTCTTATGTGTCTTCATCAGTAGAGGAGATTGATCTTGAGCTACAGTTTGAACTTGCTGTAATTGAGACTCACTATCAGCATTGGATTGATGAACTTAACAAAATGAAGTTGGAGGCATTAGAATCCACCAGAAGGAGATGGATGGCCAAGAAGAAACTGGCTGTTCGGTGA 1773 0.4146 MRSGPGSLRILRTSLRRKIQPGGIQGILKSWEGVPSKLFIGPLMKLMELKLLGIKYRKKHKYVEMKAIKGWARQILHGLLYLHSHKPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEESYTELVDIYSFGMCILEMVTFEYPYAECKNPAQIFKKVTSGIKPASLNKVSDPQIREFIEKCLVPASERLSAEELLKDPFLQVENSKDPVLYPLQPPRRTLRAYSFKSSSHSMDLDGDYKQFSMSICSESNQESPYCPVFEVQRANINNEFRLKGTKNDDNSVSLTLRIADTCAGRVRNIHFLFYLDSDTAVSVATEMVEHLELADHDVPFIAELIDYLIMKLLPWWNPSHDRWACGEINPNIDAQNFMGWPWASALPSLPSDLAIEEDGYSGIDTTPKEDFVAAENSLTESGDKATFEGDYHSQRSEASEVVVENASMKDDNCHYSSVDASSKCLSSRSISELDLGDEYFEDCKLQQENYSSGEEVVINEYPANSGSVLGTSTNVGSTRSSCSYVSSSVEEIDLELQFELAVIETHYQHWIDELNKMKLEALESTRRRWMAKKKLAVR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5815g00006 590 Pfam Protein kinase domain 52 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5815g00006 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 89 101 IPR008271 GO:0004672|GO:0006468
Vium5815g00006 590 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 305 361 IPR024678 GO:0004674|GO:0005524
Vium5815g00006 590 Gene3D Transferase(Phosphotransferase) domain 1 54 228 - -
Vium5815g00006 590 ProSiteProfiles Protein kinase domain profile. 1 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5815g00006 590 SUPERFAMILY Protein kinase-like (PK-like) 55 223 IPR011009 -
Vium5815g00006 590 SMART serkin_6 8 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5815g00006 590 FunFam probable serine/threonine-protein kinase WNK9 52 227 - -
Vium5815g00006 590 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 55 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5815g00006 Vium-Chr5815 8493 12778 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5815g00006 65 368 MAP Kinase Kinase Kinase AT1G49160 60.759 3.88e-125 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium5815g00006 Pkinase 1.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5815g00006 K08867 - gmx:100809602 856.67