Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5815g00005 ATGAATTCTGGTGCTGTCTTGACACTGCCTCCCGTGTGCAATGCGTTCGGGACCAGGGAGCCTCAGGATTTTGAGGACGAGTTTGCGGAGAAAGATCCAACCGGGCGGTATACAAGGTATACTGAAGTCTTGGGAAGGGGTGCCTTCAAAACTGTTTATAGGGCCTTTGATGAAGTTGATGGAATTGAAGTTGCTTGGAATCAAGTTAAGATTGATGGCCTCTTGCATTCAGTAGATGATCTTGCGAAATTGTATTCTGAAGTTAATCTTTTGAAGTCTTTGAAACATGACAATATCATTAAGTTCTGTGATTCTTGGATTGATGATAAGGAGAAAACTGTTAACATGATTACTGAACTGTTCACATCTGGAAATTTAAGGCAATATCGCAAGAAGCATAAATATGTTGAAATGAAAGCTATAAAAGGTTGGGCCAGGCAGATTCTTCATGGCTTACTATATCTTCATAGTCACAAGCCACCCATTATTCATAGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCAGGGTGAAGTTAAGATAGGGGATCTTGGTTTGGCAATTGTCATGCAACAACCTACCGCCCGAAGTGTTATTGGAACTCCTGAGTTTATGGCTCCAGAACTATATGAAGAGTCATACACAGAACTGGTTGACATCTATTCTTTTGGGATGTGCATATTGGAGATGGTCACTTTTGAGTATCCCTATGCCGAATGCAAAAATCCAGCTCAAATCTTTAAGAAAGTTACCTCAGGCATCAAACCTGCTTCTCTTAATAAGGTGAGTGATCCTCAAATTAGGGAGTTTATTGAGAAATGTTTGGTTCCAGCATCTGAGAGATTGTCAGCAGAGGAGCTTCTGAAAGATCCATTTCTACAAGTTGAGAATTCAAAGGATCCCGTCCTTTATCCTTTACAACCACCTAGAAGAACTCTGAGAGCGTACTCATTCAAGTCTAGTTCTCATTCTATGGACTTGGATGGTGACTACAAACAGTTTTCTATGAGTATCTGTTCCGAAAGCAACCAAGAAAGCCCATATTGTCCTGTTTTTGAGGTTCAGAGGGCAAATATTAACAATGAGTTTAGGTTGAAAGGGACTAAAAATGATGATAACTCGGTATCATTGACCTTGCGTATTGCTGATACATGTGGTCGAGTGAGGAACATACATTTTCTGTTTTACCTTGATTCAGATACCGCAGTCTCTGTGGCCACAGAGATGGTTGAACATTTGGAGCTGGCAGATCACGATGTACCTTTCATAGCTGAGCTTATTGATTATTTGATAATGAAACTTCTCCCTTGGTGGAATCCTTCGCATGATCGTTGGGCATGTGGTGAAATAAATCCTAATATAGATGCCCAAAACTTCATGGGATGGCCATGGGCTTCTGCCCTACCAAGTCTTCCCTCTGATTTGGCTATTGAGGAGGATGGCTACTCTGGGATTGATACAACCCCCAAAGAAGATTTTGTGGCAGCCGAGAACAGCTTAACAGAAAGTGGTGATAAGGCTACTTTCGAGGGTGATTATCATTCACAAAGATCTGAAGCTTCTGAGGTAGTTGTTGAGAATGCTTCTATGAAAGATGACAATTGTCATTATTCCAGTGTTGATGCAAGCTCTAAGTGCTTAAGTAGTAGGTCCATCTCTGAACTTGATCTTGGGGATGAATATTTTGAGGACTGTAAATTGCAACAAGAAAATTATTCTTCTGGGGAAGAAGTTGTTATAAATGAATACCCAGCGAACTCGGGGTCAGTTCTTGGAACATCTACTAATGTTGGGAGCACAAGAAGTAGCTGTTCTTATGTGTCTTCATCAGTAGAGGAGATTGATCTTGAGCTACAGTTTGAACTTGCTGTAATTGAGACTCACTATCAGCATTGGATTGATGAACTTAACAAAATGAAGTTGGAGGCATTAGAATCCACCAGAAGGAGATGGATGGCCAAGAAGAAACTGGCTGTTCGGTGA 1989 0.4087 MNSGAVLTLPPVCNAFGTREPQDFEDEFAEKDPTGRYTRYTEVLGRGAFKTVYRAFDEVDGIEVAWNQVKIDGLLHSVDDLAKLYSEVNLLKSLKHDNIIKFCDSWIDDKEKTVNMITELFTSGNLRQYRKKHKYVEMKAIKGWARQILHGLLYLHSHKPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEESYTELVDIYSFGMCILEMVTFEYPYAECKNPAQIFKKVTSGIKPASLNKVSDPQIREFIEKCLVPASERLSAEELLKDPFLQVENSKDPVLYPLQPPRRTLRAYSFKSSSHSMDLDGDYKQFSMSICSESNQESPYCPVFEVQRANINNEFRLKGTKNDDNSVSLTLRIADTCGRVRNIHFLFYLDSDTAVSVATEMVEHLELADHDVPFIAELIDYLIMKLLPWWNPSHDRWACGEINPNIDAQNFMGWPWASALPSLPSDLAIEEDGYSGIDTTPKEDFVAAENSLTESGDKATFEGDYHSQRSEASEVVVENASMKDDNCHYSSVDASSKCLSSRSISELDLGDEYFEDCKLQQENYSSGEEVVINEYPANSGSVLGTSTNVGSTRSSCSYVSSSVEEIDLELQFELAVIETHYQHWIDELNKMKLEALESTRRRWMAKKKLAVR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5815g00005 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Vium5815g00005 662 FunFam Probable serine/threonine-protein kinase WNK1 23 119 - -
Vium5815g00005 662 ProSiteProfiles Protein kinase domain profile. 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5815g00005 662 Gene3D Transferase(Phosphotransferase) domain 1 121 301 - -
Vium5815g00005 662 CDD STKc_WNK 36 295 - -
Vium5815g00005 662 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 23 538 - -
Vium5815g00005 662 SMART serkin_6 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5815g00005 662 Pfam Protein kinase domain 41 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5815g00005 662 SUPERFAMILY Protein kinase-like (PK-like) 40 351 IPR011009 -
Vium5815g00005 662 Gene3D - 375 456 - -
Vium5815g00005 662 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 378 433 IPR024678 GO:0004674|GO:0005524
Vium5815g00005 662 Gene3D Phosphorylase Kinase; domain 1 22 119 - -
Vium5815g00005 662 FunFam probable serine/threonine-protein kinase WNK9 121 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5815g00005 Vium-Chr5815 8493 12780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5815g00005 25 444 MAP Kinase Kinase Kinase AT5G41990 62.381 3.52e-174 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium5815g00005 Pkinase 1.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5815g00005 K08867 - gmx:100809602 1078.93