Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5807g00010 ATGAAGAAGAGATTAGCAGCAAGCACCATCGATGATTCCACTAAACTTGATCGCAAAACCATCGAAAGAAACCGCAGAATCCACATGAAATCCCTCTGCCATCAGCTTGGTTCTCTTATTCCTCCCAACCTCAAACCACCCAAATCCAAGCTGATGCTAGGGCAGCAGGACCAACTGGATCTCGCAGCAAGGTACATAAAACAAATGAGAGAGAGAATAGAGAAATTGAAGAGGCAGAAGGAGCAAGCGATGTTGAACCAAAGCAGTGAAAGAAAAATGTTCGTTGACACCAAGTTGCCAATACTCGAGCTAAGAGACTTGGGTTCCGGCATCGAAGTGATGCTGGTGAGTGGATTGAACAAGACAGTCATGTTGTACGAAGTAATCAGCGTTCTTGAGGAAGAAGGTGCTGAAGTTGTCACTGCAAGCTTCTCAACTGTCGGCGACAAGTTATTTTACGTTGTTCACGCTCAGGTTAAAATATCAAGAGTTGGAGTGGAGACGACAAGGGTAAAGGATAGACTTCAAGAATTTATTGCCCCATTAGAAATTTGGCCGGAAGACGTGTGA 570 0.4456 MKKRLAASTIDDSTKLDRKTIERNRRIHMKSLCHQLGSLIPPNLKPPKSKLMLGQQDQLDLAARYIKQMRERIEKLKRQKEQAMLNQSSERKMFVDTKLPILELRDLGSGIEVMLVSGLNKTVMLYEVISVLEEEGAEVVTASFSTVGDKLFYVVHAQVKISRVGVETTRVKDRLQEFIAPLEIWPEDV 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5807g00010 189 SMART finulus 19 75 IPR011598 GO:0046983
Vium5807g00010 189 FunFam Transcription factor bHLH162 6 95 - -
Vium5807g00010 189 Pfam Helix-loop-helix DNA-binding domain 18 69 IPR011598 GO:0046983
Vium5807g00010 189 Coils Coil 59 86 - -
Vium5807g00010 189 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 178 - -
Vium5807g00010 189 Gene3D - 7 95 IPR036638 GO:0046983
Vium5807g00010 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 69 IPR011598 GO:0046983
Vium5807g00010 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 87 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5807g00010 Vium-Chr5807 91827 93114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5807g00010 6 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.333 6.03e-25 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium5807g00010 HLH 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5807g00010 - - gmx:100809363 301.212