Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5807g00009 TATTTCATCAGAATCAGACCTTCCAAGTTCGAAGGGAAAGGTAAACTGGGCAAGATCACAGTGATGGAGATTGTGATTTCTTTGATCATATTGTTTGTGGGTATAGCGATTTTGGTGGTTATCCATGTCTGCATAGTGGGGAGAGTCTTCAGAGGAAACAATACTGGTGAAGAAGATACTCAACAGGGGCAGAACATGAGTGGAATGAAAAGAATGTTGGGTGAAGACAACATTAGCGACCTCAAAAACCTTCCTTGCTTTATGTACGAGGAGGCAGCAGCAGTATCAGCAGAGAGAAGAGAGTGCAGCAGTCCTGTCGATTGTGCTGTTTGCTTGGAGAGTTTCAAGGTTGGTGATTTGTGCAGGTTGTTGCCCAATTGCAATCACACCTTCCATCTGCACTGTATAGACTCATGGATTCTCCACACACCCATCTGTCCCATTTGCAGAACATGTGTTCTTTCAGTAACAGAACAGCAAAGTTATGCTTCTGAGAATGTAGAAATTGTAACATCATAG 519 0.4297 YFIRIRPSKFEGKGKLGKITVMEIVISLIILFVGIAILVVIHVCIVGRVFRGNNTGEEDTQQGQNMSGMKRMLGEDNISDLKNLPCFMYEEAAAVSAERRECSSPVDCAVCLESFKVGDLCRLLPNCNHTFHLHCIDSWILHTPICPICRTCVLSVTEQQSYASENVEIVTS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5807g00009 172 Pfam Ring finger domain 107 150 IPR001841 -
Vium5807g00009 172 SUPERFAMILY RING/U-box 93 162 - -
Vium5807g00009 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 154 IPR013083 -
Vium5807g00009 172 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Vium5807g00009 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 156 - -
Vium5807g00009 172 SMART ring_2 108 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5807g00009 Vium-Chr5807 70235 71105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5807g00009 61 154 C3H Transcription Factor Family AT5G06490 35.514 6.21e-18 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5807g00009 - - vum:124841729 346.665