Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5807g00007 ATGAAAAGCGATTTCTATCGACTCGCAGTTTCATCGCACTTCAGCAGTTTCCCCAAATCCTTCTCTCTGAGAAAGAAAGTGCCATGGTGGTACCAAATCCTAAACCCTCGATCCAAGTTCGTGGCCAGATGGAACCGCACCTTCCTCTACGTCTGCATCGCCGCGCTCTTCCTCGACCCTCTCTACTTCTATTTTCCCATCACGGGGGACAAGGCCTGCATGCAGACCGACCTCGTCCTCGGAGTCTTCGTCACCTTCTCCCGCACCGTCGCCGATCTCTTCTTCCTCTTCCACGTCGTCCTCAAGTTCCGCACCGCCTACGTCGCTCCCAACTCTCGCGTTTATGGCCGCAAAGAACTCGTCACAGATCCTCGTGACATCGCCTCACGCTACCTCAAATCTGATTTCATTATCGATCTCCTCGCAACCCTTCCTCTTCCTCAGATAGTGGTATGGTTCGTGATTCCAGCGGTGAAAAATTCTACAGTGGCTCATGTAAATCATACTTTATCTTTGATTGTGCTCATTCAATTCATTCCTAGATTGTTTCAAATTTTTCCTCTTCAACGGAGAATCTTGAAGACCAGTGGACTTATTGCCAAAACTGCCTTGGCAGGAGCCTTATACAATCTTGGTTCCTACATGCTCGCTAGCCATGTTTTAGGAGCCACGTGGTATGTAGCTTCTATTCAGAGACAATACGAATGTTGGATAATAACATGCAAACAAGAGATGAACAAAACGCATTCTCCATCTTGTACTCCTTCGTTTTTGGACTGTGCTACTCTTGACCACCGAGAAAGGCAAGCTTGGTTCAAACGCACCAGAGTTCTCAGTAATTGCGATGCCCTCAATAACAAAAATGAGTTTCAGTTTGGACTTTTCGCTGATGCTTTCACCGATCACGTTTCCTCATCAAGATTCGTCCAAAAATACTTCTACTGCCTCTGGTGGGGTTTAAAGAATCTAAGTTCATACGGACAAAATCTTCAGACTAGCACTTACAGTGGTGAAACATTGTTTTCAAGTTTCATATGCATCGCAGGTCTAATCTTGTTCGCGCATCTCATTGGTAACATGCAGAATTATCTGCAATCTACAACTGCTAGAATTGAAGAGTGGAGACTTAGACAAAAAGATACAGAAGAGTGGATGAATCATCGGCAGCTACCACCAGAACTGCAACAAAGGGTTCGACGGTTTGTTCAATATAAATGGCTGGCCACCAGAGGAGTAGACGAAGAAGCCATTTTGCGTGCTTTGCCCTTGGATCTTCGCCGCCAGATTCAGAGGCACCTCTGTCTCGACATTGTTCGTCGGGTTCCATTTTTCGGGCAAATGGATGACCAGCTTCTGGACGCAATATGCGAGAGGCTGGTGTCGTCACTGAACACGAAGGACTCGTATATCGTGCGAGAAGGCGATCCAGTGAGGGAGATGCTCTTCATCATCAGAGGGCAGGTGGAGAGCTCCACCACCGACGGTGGCAGAACAGGGTTCTATAACTCCATCACCCTCCGCCCGGGGGACTTCTGCGGCGAGGAGTTGCTCACGTGGGCCCTCATGTCCTCCTCCAACCTCAACCTCCCTTCCTCCACGCGCACCGTGAAGTCCATCTCGGAAGTAGAGGCTTTCGCGCTCCGCGCTGAGGACCTAAAATTCGTGTCGAACCAGTTCAAGCGGCTCCACAGCAAGAAGCTGCAGCACGCCTTCCGCTACTATTCGCATCAGTGGAGGGCATGGGGGGCCCACTTCATCCAGGCGGCGTGGCGGCGGCACCGCAAGAGGAAGCTGGCGATGGAGCTGCTGGGGAAGGAGAGCCTGTACTACACGAATGTGGTGGAGATAGTAGAGGAGGATGATGATGATTGTGATGCAGGTGATGCTGGAGGTGGTGCGGGTGAGAGTTCGAGTGGTCCCAGCGTGGGTTTTCAGAATCTTGGGGCTACCGTTTTGGCTTCTAAATTCGCTGCGAACACCAGAAAGGGAAAGATTAAGACGGTGAAAATTAATCTTCCTGATTCTGATAGTTTGAAGATGCCCAAGATGTTCAAGCCTACGGAACCCGATTTCTCCACTTTCCATGATTAA 2091 0.495 MKSDFYRLAVSSHFSSFPKSFSLRKKVPWWYQILNPRSKFVARWNRTFLYVCIAALFLDPLYFYFPITGDKACMQTDLVLGVFVTFSRTVADLFFLFHVVLKFRTAYVAPNSRVYGRKELVTDPRDIASRYLKSDFIIDLLATLPLPQIVVWFVIPAVKNSTVAHVNHTLSLIVLIQFIPRLFQIFPLQRRILKTSGLIAKTALAGALYNLGSYMLASHVLGATWYVASIQRQYECWIITCKQEMNKTHSPSCTPSFLDCATLDHRERQAWFKRTRVLSNCDALNNKNEFQFGLFADAFTDHVSSSRFVQKYFYCLWWGLKNLSSYGQNLQTSTYSGETLFSSFICIAGLILFAHLIGNMQNYLQSTTARIEEWRLRQKDTEEWMNHRQLPPELQQRVRRFVQYKWLATRGVDEEAILRALPLDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDSYIVREGDPVREMLFIIRGQVESSTTDGGRTGFYNSITLRPGDFCGEELLTWALMSSSNLNLPSSTRTVKSISEVEAFALRAEDLKFVSNQFKRLHSKKLQHAFRYYSHQWRAWGAHFIQAAWRRHRKRKLAMELLGKESLYYTNVVEIVEEDDDDCDAGDAGGGAGESSSGPSVGFQNLGATVLASKFAANTRKGKIKTVKINLPDSDSLKMPKMFKPTEPDFSTFHD 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5807g00007 696 MobiDBLite consensus disorder prediction 674 696 - -
Vium5807g00007 696 ProSiteProfiles cAMP/cGMP binding motif profile. 443 517 IPR000595 -
Vium5807g00007 696 FunFam Cyclic nucleotide-gated ion channel 1 441 559 - -
Vium5807g00007 696 Gene3D Jelly Rolls 441 561 IPR014710 -
Vium5807g00007 696 SUPERFAMILY Voltage-gated potassium channels 36 365 - -
Vium5807g00007 696 CDD CAP_ED 443 574 IPR000595 -
Vium5807g00007 696 Gene3D Helix hairpin bin 369 434 - -
Vium5807g00007 696 SMART cnmp_10 443 571 IPR000595 -
Vium5807g00007 696 Pfam Cyclic nucleotide-binding domain 466 553 IPR000595 -
Vium5807g00007 696 SUPERFAMILY cAMP-binding domain-like 373 568 IPR018490 -
Vium5807g00007 696 Pfam Ion transport protein 44 370 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium5807g00007 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 25 691 - -
Vium5807g00007 696 Gene3D - 47 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5807g00007 Vium-Chr5807 61028 64407 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5807g00007 8 691 Ion Channels AT3G48010 64.205 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5807g00007 K05391 - gmx:100783672 1241.87