Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5807g00002 ATGGTGGCAAGGTCATGCTTAAATTTGCTAGACCTGGTATCAGGGGATATGCTAAATTTCCCTCAAACTCCCAGATCTCTTCCGCGAGTTATGACTGATCCAGTAATCGTTTCTCATGGAGATGGCAAACAAAGTAATGATGATGATTCAGGTGTTAATTCATCTGAACACCGTCGCAAGATAATTATAGTATCAAATTCTCTTCCAGTCAATGGGAAAAGGGATAAGGTATCTGGCAGATGGTGCTTCAGTTATGATGAGGATTCAATTTTTTGGCAGTTAAAAGATGGTCTTTCTCCTGATGCTGATGTGGTGTATGTGGGATCTCTGAAGGTTGATGTTGATGCAAGTGAGCAAGATAAAGTTTCCCTTCAGTTGATGGAGGAATTCAACTGCTTGCCTACTTTTATTCCTCCAGAACTCTACAAACAATTCCATGATGGATTCTGCAAGCAACATTTGTGGCCTCTATTCCATTACATGTTGCCCATGTATCCAGGCAATCGCCGCTTTGACAGGTCACAGTGGCAGGCTTATGTTTCTGCTAACAAGATATTTGCAGATAAAGTCATGGAGGTCCTTAATCCAGAAGATGATTATGTATGGGTTCATGATTATCATCTCATGGTACTTCCCACTTTTCTGCGAAAGCGTTGTAGTCGAGTCAAGCTTGGTTTTTTCCTCCACAGTCCATTTCCTTCATCAGAAATTTATAAAACTCTGCCTGTCAGAGGTGAAATTTTGAAAGCACTGCTTAATGCAGATTTAGTTGGTTTTCACACCTTTGATTATGTCTGCCATTTTCTCTCGGCTACAGGAATGCTAGGCTTGGAACATGAATCCAAGAGGGGTTACATTGGGCTTGAATACTCTGGTCGCACAGTATTCATTAAAATTTTGCCTGCTGGGATTCACATGGGTCGACTTCAATCTGCCTTAGAGCATCCTTCCTCTTCTGACAAAGTCAGAGAAATCCACCAACAATTTAAGGGAAAAAAACTTATTCTTGGTGTTGATGATATGGACATATTCAAAGGTGTCAGTTTAAAATTCTTGGCCATAGAACAACTCCTGCAACAATATCCAGAAATGCAAGGTGAAATAACACTGATCCAAATTTTAAACCCCCCAAATAGTGCTGACAAAGATGTTGAGAATGCAAAGGAGGAGGCTTACATTACTGCCAAAAAGATAAACGAAAGGTTTGGTTCGGAAAGTTATGAACCTATCATCATCATTGACCGCCATGTTCCTTTCTATGAGAAGGCAGCCTATTATGCTTTGGCAGAATGTTGCATTGTGAATGCAGTTCGGGATGGTTTGAATTTGGTTCCATACAAGTACACTGTTTGTAGGCAGGGAAGTTCTAAAGTGGATGAGGCCTTAGAAATTGCTTCTGACTCCCCGCGTGCAAGTGCACTTGTTGTTTCTGAGTTTATAGGTTGCTCACCATCTCTTAGTGGAGCAATAAGGGTAAACCCATGGGATATTGATGCAGTAGCCGAAGCACTAAATTTGGCAATCACAATGCCCGATGGAGAGAAGCAACTTCGACATGAGAAGCACTACAGATACGTTAGTTCACATGATGTGGCCTACTGGGCTCGAAGCTTTGAGCAAGATCTACTGTTTTCATGCAAGGATCACTATAGGAACCGTTGCTGGGGCATTGGCTTTGGTCTCAACTTCAGAATTTTGTCTCTGTCTCCTAGTTTCAGGAGGCTATCCATAGATCACATTGTCCCTGCATATAAAAGGAGCAGTTGCAGGGCAATCTTTTTGGATTATGATGGCACAGTTGTACCTCAAGCATCCATCGTGAAAGCCCCCAGTCCTGAAGTCATATCCGTGCTAAATAATCTTTGCAGCGATGTTAACAATACTGTGTTTATTGTTAGTGGCAGGGGAAAAACTTCATTGAGTGAATGGTTTGATCAGTGCGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTTATAAGGTGGGGTAAGCATGCTAGTTGGCAAATGAGTCATGCAGATACAGATTTTGCATGGAAAAGGATTGCGGAACCTGTGATGAAATCTTATATGGAAGCCACAGATGGATCCTCTGTAGAGACCAAAGAGAGTGCCTTGGTATGGCATTACAGTGATGCAGATCCTGATTTTGGATCATGGCAAGCCATGGAGCTGTTGGATCACCTTGAAAATGTACTTGCAAATGAACCTGTTGCTGTAAAAAAAGGACAACATATTATAGAAGTCAAACCTCAGGGCATTACAAAAGGGTTAGTTGCACAGGAAGTTCTTTCTACCCTAACAAAAAAGGGTAAATTGCCAGATTTTGTACTGTGCATTGGTGATGATAGGTCTGATGAGGATATGTTTGAGAGCATTTTAACCAGATATTACAGTGCTACCTCCTCCTCAGCACCAGAAATCTTTGCATGCACTGTTGGACAAAAACCAAGCAAAGCTAGATACTACCTAGATGACACCATGGATGTGATGTCATTACTTGAGGGTCTTGGTGCTGCTTCAGTGCCTAAATCAAGATATTCTACAGAAACCCCTTTTGAGAAAAGAGAAGTATGTTTTGAGAATATCCTATAA 2595 0.4143 MVARSCLNLLDLVSGDMLNFPQTPRSLPRVMTDPVIVSHGDGKQSNDDDSGVNSSEHRRKIIIVSNSLPVNGKRDKVSGRWCFSYDEDSIFWQLKDGLSPDADVVYVGSLKVDVDASEQDKVSLQLMEEFNCLPTFIPPELYKQFHDGFCKQHLWPLFHYMLPMYPGNRRFDRSQWQAYVSANKIFADKVMEVLNPEDDYVWVHDYHLMVLPTFLRKRCSRVKLGFFLHSPFPSSEIYKTLPVRGEILKALLNADLVGFHTFDYVCHFLSATGXMLGLEHESKRGYIGLEYSGRTVFIKILPAGIHMGRLQSALEHPSSSDKVREIHQQFKGKKLILGVDDMDIFKGVSLKFLAIEQLLQQYPEMQGEITLIQILNPPNSADKDVENAKEEAYITAKKINERFGSESYEPIIIIDRHVPFYEKAAYYALAECCIVNAVRDGLNLVPYKYTVCRQGSSKVDEALEIASDSPRASALVVSEFIGCSPSLSGAIRVNPWDIDAVAEALNLAITMPDGEKQLRHEKHYRYVSSHDVAYWARSFEQDLLFSCKDHYRNRCWGIGFGLNFRILSLSPSFRRLSIDHIVPAYKRSSCRAIFLDYDGTVVPQASIVKAPSPEVISVLNNLCSDVNNTVFIVSGRGKTSLSEWFDQCENLGIAAEHGYFIRWGKHASWQMSHADTDFAWKRIAEPVMKSYMEATDGSSVETKESALVWHYSDADPDFGSWQAMELLDHLENVLANEPVAVKKGQHIIEVKPQGITKGLVAQEVLSTLTKKGKLPDFVLCIGDDRSDEDMFESILTRYYSATSSSAPEIFACTVGQKPSKARYYLDDTMDVMSLLEGLGAASVPKSRYSTETPFEKREVCFENIL 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5807g00002 865 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
Vium5807g00002 865 Gene3D Glycogen Phosphorylase B; 312 528 - -
Vium5807g00002 865 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 543 - -
Vium5807g00002 865 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 840 IPR001830 GO:0003824|GO:0005992
Vium5807g00002 865 FunFam Trehalose-6-phosphate synthase 10 721 849 - -
Vium5807g00002 865 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Vium5807g00002 865 Gene3D - 590 705 IPR023214 -
Vium5807g00002 865 Gene3D - 720 851 IPR023214 -
Vium5807g00002 865 MobiDBLite consensus disorder prediction 31 53 - -
Vium5807g00002 865 Gene3D Glycogen Phosphorylase B; 52 311 - -
Vium5807g00002 865 CDD HAD_TPP 592 832 - -
Vium5807g00002 865 NCBIfam HAD-IIB family hydrolase 592 793 IPR006379 -
Vium5807g00002 865 FunFam Trehalose-6-phosphate synthase 2 674 753 - -
Vium5807g00002 865 NCBIfam trehalose-phosphatase 591 837 IPR003337 GO:0003824|GO:0005992
Vium5807g00002 865 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Vium5807g00002 865 SUPERFAMILY HAD-like 591 838 IPR036412 -
Vium5807g00002 865 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 311 - -
Vium5807g00002 865 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
Vium5807g00002 865 Pfam Trehalose-phosphatase 594 828 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5807g00002 Vium-Chr5807 9833 15669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5807g00002 1 865 Trehalose Biosynthesis Gene Families AT1G23870 64.706 0.0 1206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5807g00002 K16055 - gmx:100812031 1636.7