Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5806g00002 ATGGGTATTCAGTGTTCCAGACTCATACCATGCTGTGTGGATTCACAAGTTAAGGCATCTGTTATTGAAACTCCAGATGCTGAAATTGAGGATAGTAGTGAGGTCAGTAACTGGCCTACATTCCGGGAATTTACACTCGAGCAACTCAAGAATGCAACATCTGGTTTTGCTGTTGAGAACATTGTATCTGAACATGGAGAGAAGGCTCCCAATGTTGTTTATAAAGGAAAACTGGAGAATCAAATGAGGATTGCTGTTAAGCGGTTTAACAGAAATGCTTGGCCGGATGCTCGGCAGTTTTTGGAGGAAGCAAGATCAGTGGGTCAGCTTCGTAACCAAAGATTGGCGAATTTGCTTGGTTGTTTTTGTGAAGGAGATGAGAGGTTGCTTGTGGCAGAATATATGCCCAATGAAACACTGGCAAAACACCTTTTCCATTGGGAAACACAACCCATGAAATGGGCAATGCGACTAAGAGTTGTTCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGGCGAGCTCTCTATCATGACCTTAATGCATATAGAGTTCTTTTTGACGAGGATGGTAATCCCAGGCTTTCGAGTTTTGGTCTTATGAAAAACAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACTCCTCCAGAGTATCTCAGAACTGGGAGAGTAACACCAGAGAGTGTAATATATAGCTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCATGCACTCGATGTCATTCGTGGAAGAAACATTCAAATGCTGACAGATTCTTGTTTGGAAGGACAATTTTCTGATGATGATGGAACTGAGTTAGTACGCTTGGCGTCTCGATGTTTACAATATGAACCTAGAGAACGGCCTAATCCAAAGTCATTGGCAGCTGCATTGGCTCCTCTTCAGAAGGAAACAGAGGTTCCTTCACATGTCTTGATGGGCATCCAGCACAGTACTAATTTTGCCTCATTATCTCCACTTGGTGAAGCATGCTCAAGGAAGGACTTGACTGCCATACATGAAGTTCTGGAAAATATTGGCTATAAAGATGATGAAGGAGTGGCAAATGAGTTATCATTTCAGATGTGGACTGATCAGATGCAGGAGACATTAAATTGCAAGAAAAAGGGGGATGTTGCTTTCCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTATACGCAGTTCATTGATGCTGGAACAATGGTTTCTCCAACAGTCTATGCAAGGCGTAGTATATGTTATCTAATCAGTGACATGCCTCAGGAAGCGCTGAACGATGCAATGCAGGTGCAAGTTGTTTCCCCTGTTTGGCACATAGCATCATATCTTCAATCTGTTGCCCTCACTGCACTTGGGATGGAGAATGAAGCTCAAGCAGCACTTAAAGATGGCACAACTCTGGAATCCAAGCGAAGTGCAACTACCAAGCAAAAATGA 1476 0.4322 MGIQCSRLIPCCVDSQVKASVIETPDAEIEDSSEVSNWPTFREFTLEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNRNAWPDARQFLEEARSVGQLRNQRLANLLGCFCEGDERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVVLHLAQALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDVIRGRNIQMLTDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNPKSLAAALAPLQKETEVPSHVLMGIQHSTNFASLSPLGEACSRKDLTAIHEVLENIGYKDDEGVANELSFQMWTDQMQETLNCKKKGDVAFRQKDFRLAIECYTQFIDAGTMVSPTVYARRSICYLISDMPQEALNDAMQVQVVSPVWHIASYLQSVALTALGMENEAQAALKDGTTLESKRSATTKQK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5806g00002 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Vium5806g00002 491 Gene3D Tetratricopeptide repeat domain 380 491 IPR011990 GO:0005515
Vium5806g00002 491 SUPERFAMILY Protein kinase-like (PK-like) 34 316 IPR011009 -
Vium5806g00002 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Vium5806g00002 491 FunFam probable serine/threonine-protein kinase At4g35230 380 489 - -
Vium5806g00002 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Vium5806g00002 491 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5806g00002 491 SUPERFAMILY TPR-like 383 481 IPR011990 GO:0005515
Vium5806g00002 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 21 485 IPR045845 GO:0004672|GO:0009742
Vium5806g00002 491 Pfam Protein tyrosine and serine/threonine kinase 72 308 IPR001245 GO:0004672|GO:0006468
Vium5806g00002 491 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5806g00002 Vium-Chr5806 9153 16079 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5806g00002 30 313 Glycoside Hydrolase AT3G07070 33.013 1.26e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vium5806g00002 PK_Tyr_Ser-Thr 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5806g00002 K14500 - gmx:100799260 954.125