Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5804g00010 ATGAGGAATTCATTTATGTTGTTGCAGATGCTTCCTCTTGGAGAATGGAATTGTCCAAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGTACTTTCTGAAAAAGATGATGCATCGGTGCCTACCGGACATACCTGCAACTTATGTGAGAAAAAATATCATGACTCTTGCGCTAAGGAGATGGATTCCCTTCCTAATAACCTCAGTACATCAGATCTTTCTTTTTGTGGGAGAGAGTGCAGAGAGCTTTCTGAACAATTGAAGAAGTATCTTGGTACCAAGCATGAACTAGAAGCGGGTTTTTCATGGTCCCTCATTCATAGAACAGATGAAGACTCAGATGCAGGTTGCAGAGGAATTACTCAGATGGTAGAATGCAATTCAAAGTTGGCTATTGCGCTGACTGTGATGAATGAATGCTTTTTACCTGTTATTGATCGGAGGAGTGGGATCAATTTAATCCGTAACATTTTATATAATAGTGGATCGAACTTTAATCGGTTGAACTATGGTGGCTTTTACACTGCTATCTTGGAGAGAGGGGATGAAATCATTGCTGCAGCATCTATCCGGTTCCACGGAACTAAGATAGCTGAGATGCCATTCATTGGAACTCGTCATATATATAGGCGTCAGGGGATGTGTCGTCGGCTTTTCTCTTCCATTGAATTGGCCCTTTGCTCTATGAAGATCGAAAAACTAGTTATTCCTGCAATTGCTGAACTAACACATGCATGGACAACAGTTTTTGGCTTCACACATCTGGACGAATCACTCAGGCAAGAACTGAGGTCACTGAATATAGTGGTCTTCCCTGGTATTGATATGTTACAGAAGCTGTTAGTGGAAAGTAATAAAACTGCAGGTTCTGAGAAAATTGGACATGAAGATGACGATTTTATCCATACCAAAATGGGAAATAGGTCAGATATGGGTTCTTCAACTCCACAAGATCCTCGTGGAAGTGATGATGTTAGTTCAAATCCTGTTAATGAGACGAATGATGAATGCAGCGATGCTTCTCAATATCTAAACCAAGTTTTGGTCGATGGGATTCTCTGTTCGAAATCTCATTCTGAGGAAATGGTGTCTGATTCGGTTTCAGATAAATGTGTTTCTCCTTCTAGAACTAGTCACAGTGCACTAAAAATGAAGAATAAAGTGGTGGCTGCTCCTCCTGTTGATAAATTAAATCCCACTTCTGTGAGAAATCACCCAGAAGATATTCCAAATGTTCAAGCTTTGGTTCAGGAAACTGCTTGTTCTGATCCATGTTCAGCAGAAAATCTTGAGAACAAATGTCACTCGTTCACTGCTATGAATTGTGATTCGTTGGAGCTTGACATTAGTCCAGTTTTGAATTCTCAAAAGTCAGACAATACTCCACCTACTAAAGAGGCTTATATGAATGACGCTCTTGAAACTGTTACTTCAGGGATTTTATCAGAAGAGAATATTATTCTAAAGCGAAGTAATCAAAATGCAGATGTCTCCATTTCTGCTCTCAATCATGCCGATGAGAGTTTGTTGCGACTGGGATCTGGTTCCAACTCTGAATTTGGATGTGAAAATGGGAAGGATTTGATTTTGAACCGAATAGTTGCTTCCAATGAAACATGTCTTGATGAAAATGGCTTAAATGCTTCCGATGATAGTTCCGAGACTGTTGTGGTCTAA 1677 0.3995 MRNSFMLLQMLPLGEWNCPNCTCKFCGIASVLSEKDDASVPTGHTCNLCEKKYHDSCAKEMDSLPNNLSTSDLSFCGRECRELSEQLKKYLGTKHELEAGFSWSLIHRTDEDSDAGCRGITQMVECNSKLAIALTVMNECFLPVIDRRSGINLIRNILYNSGSNFNRLNYGGFYTAILERGDEIIAAASIRFHGTKIAEMPFIGTRHIYRRQGMCRRLFSSIELALCSMKIEKLVIPAIAELTHAWTTVFGFTHLDESLRQELRSLNIVVFPGIDMLQKLLVESNKTAGSEKIGHEDDDFIHTKMGNRSDMGSSTPQDPRGSDDVSSNPVNETNDECSDASQYLNQVLVDGILCSKSHSEEMVSDSVSDKCVSPSRTSHSALKMKNKVVAAPPVDKLNPTSVRNHPEDIPNVQALVQETACSDPCSAENLENKCHSFTAMNCDSLELDISPVLNSQKSDNTPPTKEAYMNDALETVTSGILSEENIILKRSNQNADVSISALNHADESLLRLGSGSNSEFGCENGKDLILNRIVASNETCLDENGLNASDDSSETVVV 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5804g00010 558 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 162 256 IPR016181 -
Vium5804g00010 558 MobiDBLite consensus disorder prediction 307 337 - -
Vium5804g00010 558 CDD NAT_SF 177 236 - -
Vium5804g00010 558 PANTHER PHD FINGER PROTEIN 12 8 428 IPR042163 GO:0003714|GO:0045892
Vium5804g00010 558 MobiDBLite consensus disorder prediction 290 305 - -
Vium5804g00010 558 MobiDBLite consensus disorder prediction 290 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5804g00010 Vium-Chr5804 53904 56558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5804g00010 8 288 PHD Transcription Factor Family AT1G05380 61.702 2.49e-119 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5804g00010 - - vum:124841721 1127.46