Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5804g00009 ATGGAATCGGAAGGGAGATCGGGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAATTCCTCAGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGGTTGGGTGCTACTGCTTCCACGTCTAGGAAGCTCTATGAATCGAAGAAAAGGACCAACCTCAGTGCGTCCGTGAGTGATTCTGGATCAAGTGACGAGTTGCTGATTCCTCCTGGTAGAAGGCTTGGGTCTGAGACTATTCGAGTTTGCAATGGTTTGGCTGCCTCTGAGCGGGGTGGGAGTGAAATTAGTCGGAAGAGGGACAGAATGGAAAGAATTAGGGGTGCGGATAAAGGTTTGGAGCAGTGGGTAACTAAGCGAAGTAAGTTGGATGCATACAATTTCGAAGAATATGATGGTATGGATGTGGAGAACATGAGGAGGAGGCATTTGGATGGTAATGGAGTTGGTTTTGGAGGAAGAAGTTTTATGGGATCGGAGCATGCTACTAGGAGTGGCATTGATAGGGAATTAAAAAATGGGTCAAGTGGACGTCTTCTTGATAAGCGAAATAACTCTTATGTTGACAGGCCTAGTGGCTTGTTTCCAGGAGATCATGTTGATCACATTAGGTTCAAGAGTAACAGAGACGGCGTTCGGTTACCTATACCCTTGCAGAGGGAGAAGTTTAATTCCAATGAGTCTATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAAGTAATGATTAATAAGAAGGTGTGCGGGCAATCCAAACAATATTACGATCATCACAAAACTGTGGAAAGCAGGAGAAGGTTGGAAACTGAAGAGCCCACCAAGAGAATGAAGACTGAAGAGACTGCCAAGTGGAATGCTCCAACTCGTCCTTCATCATACTTGGAAACAAAACCTGTTGAGAAACCAGGGTTACTCAAGAGGCCGGAGAAGAAACAGATAGCATCAAGAAAATCTTTGTCAAGCAAGGATAGCAAAGGTGATGAAGGGGATTCAGATAACAGTGACACATCATTGAATCCCGGGGTAAGAAATGCTGAAGCTGCTAAGCCTGTAAAAAAGATGTTCTCCGAGGATGAACAGACTCCTTTGCATGATAAACTCTCAACTACAAAAGCGAAAGAAGGAAAAATCAAGCGTGGTAGTGGTACAGAAAAACAGAAATTGCGAGAGCGAATAAGGGAGATGCTGCTGACTTCAGGTTGGACCATAGACTATAGACCTCGAAGGAACAGAGACTACCTGGATGCAGTTTACATTAATCCGGTAGGTACAGCCTATTGGTCTATCATCAAGGCCTATGACGCGCTTCAAAAGCAATTGAATGATGATGCTAATGAGGTCAAGGCCAAAGGGGATAGTTCTTCTTTTTCTCCTATTGCAGATGAGGTGCTCAGTCAGCTAACAAGGAAAACTAGGAAAAAAATGGAGAAAGAATTGAAAAACAAGAAGAAAAAATATGATAGTGAAAGTGATAATGAGAAAGAGCCTCAAATAAGATCTGCCAGCAACAAGCATGATATGAATAGCACTGATAGTGATAACAATGAGGAGAAATTAAGCTCCTTTATAAAACAGGGAAGTAAGTCAATGAAAAATAAAATGTTTGATAGTAACGTTATCAGTGCTCGGTCTAAAATCCAGAATGCTACCCATCACTCATTTGACGGAATAGAAAAATCATCTGGATGTGATCTTCGTATACATGGACGGAAGAGTAATAAGCACGGAAGAAGTACCTTGTTAGTTCGCAGTTCTAATGAAAGATCAAATTCAGAATCTGATGTCTTTGTCCCATATATGGGAAAACGTACAGTTCCTGCCTGGTTGATTGACTCAGGAGCAGTAGAGTTAAGCCAAAAAGTTCAGTACCGCAGACGGAAGAAAGTCCTGCTGGAGGGGTGGATCACAAGAGATGGTATACATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCACAGCCATATCAAAATATATTTTTGGAATCTGGAGTTTCTCTTCTACAGTGTCAAATAGATGCATGGAATAGACAAGAGAATTCTGAAAAACTTGGTTTCCATTCTGTAGATATTAATGGTGATGATCCAAATGATGATACTTGTGGTATATGTGCTGATGGAGGGGATTTAATCTGTTGTGATAGTTGTCCATCAACATTTCATCAGAGCTGCTTGAATATACAGGTGCTCAGTCAGCTAACAAGGAAAACTAGGAAAAAAATGGAGAAAGAATTGAAAAACAAGAAGAAAAAATATGATAGTGAAAGTGATAATGAGAAAGAGCCTCAAATAAGATCTGCCAGCAACAAGCATGATATGAATAGCACTGATAGTGATAACAATGAGGAGAAATTAAGCTCCTTTATAAAACAGGGAAGTAAGTCAATGAAAAATAAAATGTTTGATAGTAACGTTATCAGTGCTCGGTCTAAAATCCAGAATGCTACCCATCACTCAATTGACGGAATAGAAAAATCATCTGGATGTGATCTTCGTATACATGGACGGAAGAGTAATAAGCACGGAAGAAGTACCTTGTTAGTTCGCAGTTCTAATGAAAGATCAAATTCAGAATCTGATGGCTTTGTCCCATATATGGGAAAACGGACAGTTCCTGCCTGGTTGATTGACTCAGGAGCAGTAGAGTTAAGCCAAAAAGTTCAGTACCGCAGACGGAAGAAAGTCCTGCTGGAGGGGTGGATCACAAGAGATGGTATACATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCACAGCCATATCAAAATATATTTTTGGAATCTGGAGTTTCTCTTCTACAGTGTCAAATAGATGCATGGAATAGACAAGAGAATTCTGAAAAACTTGGTTTCCATTCTGTAGATATTAATGGTGATGATCCAAATGATGATACTTGTGGTATATGTGCTGATGGAGGGGATTTAATCTGTTGTGATAGTTGTCCATCAACATTTCATCAGAGCTGCTTGAATATACAGATGCTTCCTCTTGGAGAATGGAATTGTCCAAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGTACTTTCTGAAAAAGATGATGCATCGGTGCCTACCGGACATACCTGCAACTTATGTGAGAAAAAATATCATGACTCTTGCGCTAAGGAGATGGATTCCCTTCCTAATAACCTCAGTACATCAGATCTTTCTTTTTGTGGGAGAGAGTGCAGAGAGCTTTCTGAACAATTGAAGAAGTATCTTGGTACCAAGCATGAACTAGAAGCGGGTTTTTCATGGTCCCTCATTCATAGAACAGATGAAGACTCAGATGCAGGTTGCAGAGGAATTACTCAGATGGTAGAATGCAATTCAAAGTTGGCTATTGCGCTGACTGTGATGAATGAATGCTTTTTACCTGTTATTGATCGGAGGAGTGGGATCAATTTAATCCGTAACATTTTATATAATAGTGGATCGAACTTTAATCGGTTGAACTATGGTGGCTTTTACACTGCTATCTTGGAGAGAGGGGATGAAATCATTGCTGCAGCATCTATCCGGTTCCACGGAACTAAGATAGCTGAGATGCCATTCATTGGAACTCGTCATATATATAGGCGTCAGGGGATGTGTCGTCGGCTTTTCTCTTCCATTGAATTGGCCCTTTGCTCTATGAAGATCGAAAAACTAGTTATTCCTGCAATTGCTGAACTAACACATGCATGGACAACAGTTTTTGGCTTCACACATCTGGACGAATCACTCAGGCAAGAACTGAGGTCACTGAATATAGTGGTCTTCCCTGGTATTGATATGTTACAGAAGCTGTTAGTGGAAAGTAATAAAACTGCAGGTTCTGAGAAAATTGGACATGAAGATGACGATTTTATCCATACCAAAATGGGAAATAGGTCAGATATGGGTTCTTCAACTCCACAAGATCCTCGTGGAAGTGATGATGTTAGTTCAAATCCTGTTAATGAGACGAATGATGAATGCAGCGATGCTTCTCAATATCTAAACCAAGTTTTGGTCGATGGGATTCTCTGTTCGAAATCTCATTCTGAGGAAATGGTGTCTGATTCGGTTTCAGATAAATGTGTTTCTCCTTCTAGAACTAGTCACAGTGCACTAAAAATGAAGAATAAAGTGGTGGCTGCTCCTCCTGTTGATAAATTAAATCCCACTTCTGTGAGAAATCACCCAGAAGATATTCCAAATGTTCAAGCTTTGGTTCAGGAAACTGCTTGTTCTGATCCATGTTCAGCAGAAAATCTTGAGAACAAATGTCACTCGTTCACTGCTATGAATTGTGATTCGTTGGAGCTTGACTTTAGTCCAGTTTTGAATTCTCAAAAGTCAGACAATACTCCACCTACTAAAGAGGCTTATATGAATGACGCTCTTGAAACTGTTACTTCAGGGATTTTATCAGAAGAGAATATTATTCTAAAGCGAAGTAATCAAAATGTAGATGTCTCCATTTCTGCTCTCAATCATGCCGATGAGAGTTTGTTGCGACTGGGATCTGGTTCCAACTCTGAATTTGGATGTGAAAATGGGAAGGATTTGATTTTGAACCGAATAGTTGCTTCCAATGAAACATGTCTTGATGAAAATGGCTTAAATGCTTCCGATGATAGTTCCGAGACTGTTGTGGTCTAA 4680 0.4051 MESEGRSGGSGVVVKSRNSSGCLIVRKKGDGLGATASTSRKLYESKKRTNLSASVSDSGSSDELLIPPGRRLGSETIRVCNGLAASERGGSEISRKRDRMERIRGADKGLEQWVTKRSKLDAYNFEEYDGMDVENMRRRHLDGNGVGFGGRSFMGSEHATRSGIDRELKNGSSGRLLDKRNNSYVDRPSGLFPGDHVDHIRFKSNRDGVRLPIPLQREKFNSNESIRVQGKNGVLKVMINKKVCGQSKQYYDHHKTVESRRRLETEEPTKRMKTEETAKWNAPTRPSSYLETKPVEKPGLLKRPEKKQIASRKSLSSKDSKGDEGDSDNSDTSLNPGVRNAEAAKPVKKMFSEDEQTPLHDKLSTTKAKEGKIKRGSGTEKQKLRERIREMLLTSGWTIDYRPRRNRDYLDAVYINPVGTAYWSIIKAYDALQKQLNDDANEVKAKGDSSSFSPIADEVLSQLTRKTRKKMEKELKNKKKKYDSESDNEKEPQIRSASNKHDMNSTDSDNNEEKLSSFIKQGSKSMKNKMFDSNVISARSKIQNATHHSFDGIEKSSGCDLRIHGRKSNKHGRSTLLVRSSNERSNSESDVFVPYMGKRTVPAWLIDSGAVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIFLESGVSLLQCQIDAWNRQENSEKLGFHSVDINGDDPNDDTCGICADGGDLICCDSCPSTFHQSCLNIQVLSQLTRKTRKKMEKELKNKKKKYDSESDNEKEPQIRSASNKHDMNSTDSDNNEEKLSSFIKQGSKSMKNKMFDSNVISARSKIQNATHHSIDGIEKSSGCDLRIHGRKSNKHGRSTLLVRSSNERSNSESDGFVPYMGKRTVPAWLIDSGAVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIFLESGVSLLQCQIDAWNRQENSEKLGFHSVDINGDDPNDDTCGICADGGDLICCDSCPSTFHQSCLNIQMLPLGEWNCPNCTCKFCGIASVLSEKDDASVPTGHTCNLCEKKYHDSCAKEMDSLPNNLSTSDLSFCGRECRELSEQLKKYLGTKHELEAGFSWSLIHRTDEDSDAGCRGITQMVECNSKLAIALTVMNECFLPVIDRRSGINLIRNILYNSGSNFNRLNYGGFYTAILERGDEIIAAASIRFHGTKIAEMPFIGTRHIYRRQGMCRRLFSSIELALCSMKIEKLVIPAIAELTHAWTTVFGFTHLDESLRQELRSLNIVVFPGIDMLQKLLVESNKTAGSEKIGHEDDDFIHTKMGNRSDMGSSTPQDPRGSDDVSSNPVNETNDECSDASQYLNQVLVDGILCSKSHSEEMVSDSVSDKCVSPSRTSHSALKMKNKVVAAPPVDKLNPTSVRNHPEDIPNVQALVQETACSDPCSAENLENKCHSFTAMNCDSLELDFSPVLNSQKSDNTPPTKEAYMNDALETVTSGILSEENIILKRSNQNVDVSISALNHADESLLRLGSGSNSEFGCENGKDLILNRIVASNETCLDENGLNASDDSSETVVV 1559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 498 523 - -
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 254 278 - -
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 463 523 - -
Vium5804g00009 1559 Coils Coil 426 446 - -
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 1308 1338 - -
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 346 382 - -
Vium5804g00009 1559 SUPERFAMILY FYVE/PHD zinc finger 972 1028 IPR011011 -
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 1291 1338 - -
Vium5804g00009 1559 ProSitePatterns Zinc finger PHD-type signature. 983 1022 IPR019786 -
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 296 328 - -
Vium5804g00009 1559 CDD PHD2_CHD_II 983 1022 - -
Vium5804g00009 1559 SMART PHD_3 982 1023 IPR001965 -
Vium5804g00009 1559 SMART PHD_3 706 740 IPR001965 -
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 746 773 - -
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 32 69 - -
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 746 792 - -
Vium5804g00009 1559 PANTHER PHD FINGER PROTEIN 12 744 1428 IPR042163 GO:0003714|GO:0045892
Vium5804g00009 1559 Coils Coil 461 488 - -
Vium5804g00009 1559 Pfam PHD-finger 983 1025 IPR019787 -
Vium5804g00009 1559 Pfam Tify domain binding domain 905 955 IPR032308 -
Vium5804g00009 1559 Pfam Tify domain binding domain 629 679 IPR032308 -
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 774 792 - -
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 254 382 - -
Vium5804g00009 1559 ProSiteProfiles Zinc finger PHD-type profile. 980 1025 IPR019787 -
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 159 182 - -
Vium5804g00009 1559 SUPERFAMILY FYVE/PHD zinc finger 696 736 IPR011011 -
Vium5804g00009 1559 Coils Coil 737 764 - -
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 463 497 - -
Vium5804g00009 1559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 796 IPR013083 -
Vium5804g00009 1559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 971 1081 IPR013083 -
Vium5804g00009 1559 MobiDBLite consensus disorder prediction 1291 1306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5804g00009 Vium-Chr5804 45900 53327 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5804g00009 1 736 PHD Transcription Factor Family AT4G14920 44.837 3.37e-160 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium5804g00009 TDBD 6.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5804g00009 - - vum:124841712 3004.93