Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5804g00008 ATGGAACCAGGCGTGAGATCGAGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAACTCCTCGGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGATTGGGTGCTACTGCTTCCACGTCTCGGAAGCTCTATGAATCCAAGAAAAGGGCCAATATCAGCGTTTCCCTGAGTGATTCTGGATCAAGCGACGAGCTGCTGATTCCTCCTGGTAGAAGGCTCGGTCCTGAGACTATTCGAGTTTGCAATGGTTTGGCTGCATCTGAGCGGGGTGGGAATGAAGTTAGTCGGAAAAGGGACAGAGTGGAACGAATTAGGGTAACTGGGGAAGGTATTGCGGCGGAGAAAGGTTTGGACCCGAGGGACAGGAAGCGTAGTAAGTTGGATGTATATGATTTTGATGAATATGATGGAATGGGTGTGGAAAACACAAGGAGGAGGCATTTAGATGATAATGGAGTTGGTCACGGAGGAGGAAGGTTTATGGGACCAGTGCACGCTGCTAGAAATGGCGTTGATAGGGAATTCAAAGCAGGTTCAAGTGGACGAGTTCTCGATAAGAGAAAGGACTCCTATGGTGACAGGCCTAGTGGCTTGTTTCCGGTGGATGATGTTGAGCACAGTAGGTTCAAGATGAACAGGGATGGTACTCGGGCACCTGTATCCCCGCAGAAGGAGAAGTTTAATTCAGATGAGTCCATTAGGGTTCAGGGGAAGAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGCGTGGGCCATCAGAACAGTATTATGATCATCGCAAGCCTGTTGAAAGCAGGCAAAGGTTAAGAACCGAAGAGCCTACCAAGAGGATAAAGGCTGAAGAGACTAAGAGGAATGTTCCAAGTCGTCCTTCATCATACATGGAAACAAAACCTGTTGAGAAACCAAGATTAGTCAAGAGGCCAGAAAAGAAACGGATAACGCCCAAAAAATCCTTGTCAAGCAAGGACAGTAAGCGTGATGAGGGGGATTCAGATAACAGTGACGCATCACTGAATCCGGGAATAAGAAATACTGAAACTCATAAGCCTGCAAAAAAAGTAATTTCGGAGGATGAGCAGACACCTGTGCACGAAAAACTCCCCACCACAGGAACAAAAGATGGGAAAATCAAGCGTGGCAGTGGTACAGAAAAGCAGAAACTGCGAGAGCGAATAAGGGAGATGCTGCTGACTTCAGGTTGGACTATAGACTATAGACCTCGAAGGAACAGAGACTACCTGGATGCAGTTTACATTAACCCAGCAGGTACAGCCTATTGGTCCATCATCAAGGCCTATGATGCGCTTCAAAAGCAATTGAATGATGATGCTAATGAGGTCAAGGCCAAAGGGGATAGTTCTTCTTTTTCTCCTATTGCAGATGAGGTGCTCAGTCAGCTAACAAGGAAAACTAGAAAGAAAATGGAGAAAGAAATGAAAAAGAAGAAGAAAAAATATGATAGTGAAAGTGGTAACGAAAAAGAGCCTCAAAGAAAGAGATCTGCCAGCAACAACAAGTGTGATATGAATAGCACGGACAGTGACAGCAACGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAGTAAAATGTCCGAAAATATCATTACCGGTGCTCGCACTAAAATCCAGAATGCTACCCATCACTCAAGTGATGGAATGGAAAAATCATCATTTGGAGGTGATCCTCATATACACGGACGGAAGAGTAAAAAACACGGAAGATGTACCTTGTTAGTTCGCAGTTCTAACAAAGGATCAAATTCGGAATCTGATGGCTTTGTCCCATATGTGGGGAAAAGGACAGTTCTTGCCTGGTTAATTGACTCTGGAACTGTAGAGCTAAGCCAAAAGGTTCAGTACCGCAGACGGAAAAAGGTCCTGCTGGAGGGGTGGATCACAAGAGATGGCATTCATTGTGGCTGCTGCAGTAAGATCCTTACTGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCACAACCATATCAAAATATATATTTGGAATCCGGTGTTTCTCTTCTACAATGCCAAATAAATGCATGGAATAGACAAGAGCATTCTGAAAAAATTGGTTTCCATTCTGTGGATATTGATGGTAATGATCCAAATGATGATACATGCGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATCCAAATGCTTCCTCCTGGTGAATGGCATTGTACAAATTGCACCTGTAAATTTTGTGGCATAGCCACTAGGACTTCTGAAAAAGATGATGCATTTGTGTATGTCCTACGGACATGCAACTTATGTGAGAAAAAATATCATGACTCTTGCTCTGAGGAGATGGATACCCATCCTAATTACTTGAATACTTCAAACCTTTCTTTCTGTGGGAAAGAGTGTAAAGAGCTTTCTGAACACTTGAAGAAATACCTTGGTACCAAGCATGAACTAGAAGGGGGGTTTTCATGGTCTCTCATTCATAGAACAGATGAAGACTCAGAGGCAGCTTGCAGGGGAATTACCCAGAGAGTAGAATGCAATTCAAAGTTGGCTATTGGACTGGCTGTCATGGATGAATGCTTTTTACCTGTTATTGATAGGAGAAGTGGGATCAATATAATCCGCAATGTTTTATATAATACTGGGTCAAACTTTAGTCGGTTGAGCTATGGTGGATTTTACGCTGCTATTTTGGAAAAAGGGGATGAAATAATTGCTGCGGCATCTATCAGGTTGCATGGAACTAAGATAGCAGAGATGCCATTCATTGGAACTCGCCATGTATATAGGCGCCAGGGGATGTGCCGCCGGCTCTTTTCTGCCATTGAATCGGCCCTTTGCACTCTGAAAGTTGAAAATCTAGTTATTCCTGCAATTGCTGAACTCACGCATACATGGACAACGGTTTTTGGCTTCACACGTCTAGACAATTCACTCAGGCAAGAAATGAAGTCACTTAATATGATGGTCTTCCCTGGTATAGATATGTTACAAAAGCGGTTGGTTGAACAAGAAAAACATGAAGGTTCTGAGAAAATGGGAAATGGAGGTAATGATTTTAACCATACCAAAATGGGAAATGGGTCAGATATGGGTTCTTTACCTCAACAAAATCCTCATGGAAGTGATGATGCTAGTTCAAATCCTGCTAATGAGACGAATGATGAATGCAGCGATGCTTCTCAAGAACTTAACAATCAAGTTATGGTTGATGGAACTCTCAGCTCCAAATCTGATTCCGAGGAAATGGTGTCTGATTCAGTTTCTGATAAATGTATTTCTCCTTCTAGGACTAGTCACAGTGCACTAGAAATGAAGAATAAAGTGGATGCTGCTCCTCCTGTTGATAAATTAAATCCTCCTTCAAAATGCGAATCCATTTCTCCTAATGACACATCTGTGAGTGACTCAGAAGATATTCCAAATGTTAAAGGTTTGGTTCAGGAAACTTCTTCGTCTGATCCATGTTCACAGGAAAACCTGGACAAGAAAGGTCACGCATTCACTGCTATGAATTGTGACTCGTCAGAGCCTGACATTAATCCAGTGGTGGGTTCTCCAAAGGCAGGCGATACTTCACCTACTAAAGAGGTTCGTATGGAGGACTCCCTTGAAGCTGTTTCTTCAAGGAGTTTATTGGAGGAGAATATTAGAAAGGGGAATGATCAGAATATAGATGTCTCCAGTTCTGCTCTCAAACTTGCCGATAAGAGTTTGTTGCAGGTAGGATCTGATTCCAAAAATGAAATTGGATGTGAAAATGAGAAGGATGTACGTGCTGTAAACTCTTCTGGCGATAATTCTGATACTGTTCTGTTCTAG 3864 0.4275 MEPGVRSSGSGVVVKSRNSSGCLIVRKKGDGLGATASTSRKLYESKKRANISVSLSDSGSSDELLIPPGRRLGPETIRVCNGLAASERGGNEVSRKRDRVERIRVTGEGIAAEKGLDPRDRKRSKLDVYDFDEYDGMGVENTRRRHLDDNGVGHGGGRFMGPVHAARNGVDREFKAGSSGRVLDKRKDSYGDRPSGLFPVDDVEHSRFKMNRDGTRAPVSPQKEKFNSDESIRVQGKNGVLKVMVNKKKVRGPSEQYYDHRKPVESRQRLRTEEPTKRIKAEETKRNVPSRPSSYMETKPVEKPRLVKRPEKKRITPKKSLSSKDSKRDEGDSDNSDASLNPGIRNTETHKPAKKVISEDEQTPVHEKLPTTGTKDGKIKRGSGTEKQKLRERIREMLLTSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDANEVKAKGDSSSFSPIADEVLSQLTRKTRKKMEKEMKKKKKKYDSESGNEKEPQRKRSASNNKCDMNSTDSDSNEEKLSSFIKQGSKSMKSKMSENIITGARTKIQNATHHSSDGMEKSSFGGDPHIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYVGKRTVLAWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQINAWNRQEHSEKIGFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCTNCTCKFCGIATRTSEKDDAFVYVLRTCNLCEKKYHDSCSEEMDTHPNYLNTSNLSFCGKECKELSEHLKKYLGTKHELEGGFSWSLIHRTDEDSEAACRGITQRVECNSKLAIGLAVMDECFLPVIDRRSGINIIRNVLYNTGSNFSRLSYGGFYAAILEKGDEIIAAASIRLHGTKIAEMPFIGTRHVYRRQGMCRRLFSAIESALCTLKVENLVIPAIAELTHTWTTVFGFTRLDNSLRQEMKSLNMMVFPGIDMLQKRLVEQEKHEGSEKMGNGGNDFNHTKMGNGSDMGSLPQQNPHGSDDASSNPANETNDECSDASQELNNQVMVDGTLSSKSDSEEMVSDSVSDKCISPSRTSHSALEMKNKVDAAPPVDKLNPPSKCESISPNDTSVSDSEDIPNVKGLVQETSSSDPCSQENLDKKGHAFTAMNCDSSEPDINPVVGSPKAGDTSPTKEVRMEDSLEAVSSRSLLEENIRKGNDQNIDVSSSALKLADKSLLQVGSDSKNEIGCENEKDVRAVNSSGDNSDTVLF 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 1268 1287 - -
Vium5804g00008 1287 PANTHER PHD FINGER PROTEIN 12 339 1173 IPR042163 GO:0003714|GO:0045892
Vium5804g00008 1287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 813 IPR013083 -
Vium5804g00008 1287 SMART PHD_3 715 756 IPR001965 -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 51 71 - -
Vium5804g00008 1287 Pfam PHD-finger 716 758 IPR019787 -
Vium5804g00008 1287 ProSiteProfiles Zinc finger PHD-type profile. 713 758 IPR019787 -
Vium5804g00008 1287 ProSitePatterns Zinc finger PHD-type signature. 716 755 IPR019786 -
Vium5804g00008 1287 SUPERFAMILY FYVE/PHD zinc finger 701 758 IPR011011 -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 1183 1221 - -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 348 386 - -
Vium5804g00008 1287 CDD PHD4_NSD 716 755 - -
Vium5804g00008 1287 Coils Coil 432 452 - -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 248 287 - -
Vium5804g00008 1287 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 902 970 IPR016181 -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 1089 1156 - -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 469 536 - -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 316 335 - -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 1018 1074 - -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 1089 1116 - -
Vium5804g00008 1287 Pfam Tify domain binding domain 638 688 IPR032308 -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 1030 1074 - -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 483 504 - -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 1137 1156 - -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 175 386 - -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 177 212 - -
Vium5804g00008 1287 Coils Coil 467 494 - -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 505 536 - -
Vium5804g00008 1287 MobiDBLite consensus disorder prediction 553 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5804g00008 Vium-Chr5804 37042 45020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5804g00008 1 1016 PHD Transcription Factor Family AT4G14920 49.516 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium5804g00008 TDBD 7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5804g00008 - - gmx:102666194 1984.92