Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5804g00003 ATGTCTTTGGCTATCTTTCTTTCTTCCATTCTCCTACTACTTTCGTTTCTGAATGGTTTCCATGCCGTTGTACATCCAAACACCAGCATCACTGCTGGATCAAACTCTACATGGAAGTCACCCTCGGGTGATTTTGAATTTGGATTCCTCCATCTTCCCAGTGGTCTCTTTCTTGTGGGAATATGGTTTGGGAGAATCTCAGATATAACACTCGCATGGTACCTCTCTCCCCCTGTGGAAACAAATTCTCAAATCCAATTCACTTCTGCAGGAAACCTTGTGGTAGCCTACCAAAACGGAACTACTGCTATGACCATATACAATTCTGCACAAGGCGATGCTGCAACATCTGCCTACATGCAAGATGATGGCAATTTTGTGATCAAGGACTCCAACTTAGTATATGTGTGGCAGAGTTTCAACTCTCCAACCAACACCATCTTACCGGGCCAAACCTTGTTGAGTACTAAAACCCTCTTTTCCAAAGGGAAAGGACCTTCAAATTACTCGTTGGGAAGTTTCATGTTACAAATGCAAGAAGATGGCAACTTGGTGCTCAAAGCGTACCGGTGGGCAGACCCTGCATACTGGTTCACTTCACCCATAACCGCCAATATGACATTGGTGTTTAATGCTACCACTGCTCTCATGTACCGTGTCAACGATGCTGGGAACATCTTCACCCTAACCGAAATCACTCCAACCCCGGTGGAGGATTACTATCACCGTGCTACAATAGATGAGAATGGGAATTTCCAGCAATATGCTTATCACAAGAGGAATGGGACCGGTTGGAGGAGGGTTTGGAGAGCCGTGGAGGATCCCTGCAGAGTGAATGCTATCTGTGGTGTGTATGGCTTGTGCAGTTCTCCTGACAATGAATCAGTCAAGTGTGAGTGTATTCCAGGTTATATCCCTTTGGATGATCAAGATGTTTCAAAAGGGTGTCGCCCACCAGCTGTCATCAATTACTGTGCAGAAAACAACTTCAAGCTCCAGTTTTTTGACGACACTGATTTCCATTTTGTTACTCATCTTGTTAGGTTGGCTGGTGTTGACTTCGAAAGTTGTAAGAAGGATGTAATAGATGATTGTAACATTGTTGCTGCAACTTATGACCATTCCACCTCCACATGTGCTAAGAAGAGACTGCCCTTGCTGAATGCTAGAAATAGCTCTTCTTCAAAGGGATTGAAAGCACTGCTTAAAGTTGCTAACAGGATTGAGTCTGGGACATCTGAACTTCCAAAGAAGAAAAGTTTTAATGTAAGAGTCTTTTTGAAGGTTCTTGTTGCAGTTACTGCAACTCTTGCCTGTTTCTTTGGTGCCCTTGCTGTCTACTATCATCCTTTCACTCGGAGACTTACAAGGAAAAAGAAGCATCTGAATGCAACAGCTATTGGAATCAACTTCAGAGAATTTACTTTTCAGGAGCTGCATGAAGCAACAGACGGATTTACTAAGATTCTTGGAAAGGGAGCTTCTGGCAAAGTCTATCGTGGTGCTTTAGTAATAGGTGATGCAAAGATTGATGTTGCAGTAAAGAAACTGGAAAAGAAAATAGAAAAAAGTGATAGTGAATTCACGACTGAGCTCAAAATTATTGGTCGTACTCATCACAGAAATTTGGTGAGGCTTTTGGGGTTTTGCATTGAGAGTAGCCATCGAATTCTTGTGTATGAGTTGATGCCAAATGGTGCCCTCTCTAGTTTTTTGTTTGGAGAGGGATAA 1731 0.4287 MSLAIFLSSILLLLSFLNGFHAVVHPNTSITAGSNSTWKSPSGDFEFGFLHLPSGLFLVGIWFGRISDITLAWYLSPPVETNSQIQFTSAGNLVVAYQNGTTAMTIYNSAQGDAATSAYMQDDGNFVIKDSNLVYVWQSFNSPTNTILPGQTLLSTKTLFSKGKGPSNYSLGSFMLQMQEDGNLVLKAYRWADPAYWFTSPITANMTLVFNATTALMYRVNDAGNIFTLTEITPTPVEDYYHRATIDENGNFQQYAYHKRNGTGWRRVWRAVEDPCRVNAICGVYGLCSSPDNESVKCECIPGYIPLDDQDVSKGCRPPAVINYCAENNFKLQFFDDTDFHFVTHLVRLAGVDFESCKKDVIDDCNIVAATYDHSTSTCAKKRLPLLNARNSSSSKGLKALLKVANRIESGTSELPKKKSFNVRVFLKVLVAVTATLACFFGALAVYYHPFTRRLTRKKKHLNATAIGINFREFTFQELHEATDGFTKILGKGASGKVYRGALVIGDAKIDVAVKKLEKKIEKSDSEFTTELKIIGRTHHRNLVRLLGFCIESSHRILVYELMPNGALSSFLFGEG 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5804g00003 576 SMART blect_4 29 143 IPR001480 -
Vium5804g00003 576 Gene3D - 16 142 IPR036426 -
Vium5804g00003 576 ProSitePatterns Protein kinases ATP-binding region signature. 490 516 IPR017441 GO:0005524
Vium5804g00003 576 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 201 IPR036426 -
Vium5804g00003 576 SUPERFAMILY Protein kinase-like (PK-like) 476 576 IPR011009 -
Vium5804g00003 576 FunFam S-receptor-like serine/threonine-protein kinase 453 562 - -
Vium5804g00003 576 Pfam S-locus glycoprotein domain 238 306 IPR000858 GO:0048544
Vium5804g00003 576 Pfam Protein tyrosine and serine/threonine kinase 487 572 IPR001245 GO:0004672|GO:0006468
Vium5804g00003 576 ProSiteProfiles Bulb-type lectin domain profile. 21 141 IPR001480 -
Vium5804g00003 576 Pfam D-mannose binding lectin 79 157 IPR001480 -
Vium5804g00003 576 ProSiteProfiles Protein kinase domain profile. 484 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5804g00003 576 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 31 573 - -
Vium5804g00003 576 Gene3D - 143 281 - -
Vium5804g00003 576 Gene3D Phosphorylase Kinase; domain 1 456 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5804g00003 Vium-Chr5804 15165 17765 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5804g00003 416 573 Receptor kinase-like Gene Family AT2G43700 37.975 4.64e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium5804g00003 PK_Tyr_Ser-Thr 1.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5804g00003 - - vum:124841710 1142.49