Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5804g00002 ATGGTTATCCGATTTCTTCTCTTTGTTGCCTTCCTTTTATGTTCCTTTGCTTCCGGGAATGATGCTAACTCAATCCAACTGGGCTCCACCATCGTGGCTGGCACCAATTCATCTTGGCGATCATCCTCTGGTGATTATGCCTTTGGATTCTATCACCTCACTAGTGGCCGCTATCTTGTTGGAATTTGGTTTGACAAAATTCCAAATAAAACATTGGTTTTGTCTGCAAACCGTGACAACCCAGTAGAAATTGGATCATTCATCAATCTCACACGAAGTGGCCAATTTGTGCTCCAACCTCTCAACGGGACTTCATTTCCCATCTACGAAGGAACAAACACAGCATCAGCAGTTATGCAGAATGACGGGAATTTCGTCTTGAAGAATGCACTTTCTAACGTTATATGGCAGAGCTTTGACTCACCCACGGACACTCTTCTATTAGGCCAAACTTTGAATTCCAGTCGGAATCTCTATTCCAATGCCAATGGATCAGTTGACTACTCAACTGGACAATACAGTTTGGAGATTCAGGAATTTGATGGCAACATTGTTCTTAAAGCTTACCGGTTCACGGATTCTGCCTACTGGTGGAGTGACACTGTCCAAAACACAGGTGTGAGAATTATTTTCGACAACACAACAGCTTTTCTTTACGCGGTCAATGCCACCCACCAAATTATATTTAACATGACCACGAATGTTGAGGGTGCAATCGAAGATTACTATCACCGTGTGGTGGTGGATGACAAGGGAAACTTTCAGAAGTGGATTTACCACAAAGAAAATGGAAGTGAGTGGAGATCTGTGTGGCAGGCAGTAACAGAGCCTTGCACTGTGACTGCTCTTTGTGGGGTGTATGGCTTCTGCAATACAACTGATTCCGAAACCCATACATACACTTGTGGATGCTTACCTGGCTATACTCCTTTGGATCCAACAGCACCCTCCAAGGGGTGCTATCTCAGTGAGGTCAAGGACTTGTGTCCTGCAAATTCTTCTGGCTCAAACTTTATGGTGGAAGTGAAAGAGATCCAAGATGCTGATATATCAAACGAGGGCTACTTTTATTTTGATCTAGTAGTCTTGAATAACATGGATCTGGATGGATGCAAGAAAGAATTGTTGGATGATTGTCTCTGCATGGTTGCAGTTTCAAAGGGCAGTGATTGCTATAAGAAAAAATGGCCAATTATAAATGCCGTAAGAACCATCCCTAAAACTAATGATTTTGTGATGCTGGTTAAAGTTCCTCTGGTTGCCAATGATAAGGAATCATCGTCTTTGGTTATTTTGATAGTGGCTCTCATCTCTTGTTCACTACTTGCTGCATTGTTTTTAGCTACTACCATATACCATCACCCTGTTTGTCTGTATATCCTACATAAACAGGCACCACCAAAGCCCAAGCCAAAGCCGATGGATATCAATCTGAAGGCATTTTCATTCCAACAGCTGAGAGAAGCAACAAACGGATTCAAAGACAAACTTGGTCGAGGAGCCTATGGTACAGTGTATGGTGGGGTTTTAAACTTGGAGGATCAACAGGTTGATGTTGCTGTCAAACAACTTGAGCAAGTAGACGACCAAGGTGATAAAGAATTTGTGACAGAAGTTCAAGTTATTGCTCTTACTCATCACAGAAATCTTGTTGGTTTACTGGGCTTTTGCAATGAACAGAGTCATAGGCTTTTGGTTTATGAGAAAATGGAAAACGGAACACTATCCTACTTCCTTTTCGGAGAAGGGGATAAACCCAGCTGGGAGAGTAGAGTCAGAATTGTGCTTGAAATTGCAAGAGGCTTGTTATATCTTCATGAAGAGTGTGACAATCAAATCATCCACTGTGACATAAAGCCTCAGAATGTTCTGCTTGACTCTAGTTACACTGCAAAGATCTCAGATTTTGGACTGGCAAAGTTGCTAATGAAAGATAAAACTCGAACAAACACCAATGCTAGAGGAACAGTGGGATATATGGCACCAGAATGGCTAAAAAATGCACCTGTTACTACAAAGGTGGATATCTACAGCTTTGGTGTCATGTTGTTGGAAATCATATTTTGCAGAAAACACATCGAGTTGCATCAAATTGAGGATGAAACAATGGGTGATGACTTGATACTAATAGATTGGGTTATGTATCTGGCAAAAGAAAACAACTTAAGAGCACCAGTGATTCATCATCTTGAAGTTGAAAGTGATATCAAGAGGTTTGAAAGAATGGCCATGGTTGGATTATGGTGTGTAAACCCCAATCCAACTCTTCGACCATCTATGAAAATTGTGGTACAGATGTTGGAAGGAAATGTCGAAGTAGGAGTCCCAACAATAGACTCATAG 2343 0.4153 MVIRFLLFVAFLLCSFASGNDANSIQLGSTIVAGTNSSWRSSSGDYAFGFYHLTSGRYLVGIWFDKIPNKTLVLSANRDNPVEIGSFINLTRSGQFVLQPLNGTSFPIYEGTNTASAVMQNDGNFVLKNALSNVIWQSFDSPTDTLLLGQTLNSSRNLYSNANGSVDYSTGQYSLEIQEFDGNIVLKAYRFTDSAYWWSDTVQNTGVRIIFDNTTAFLYAVNATHQIIFNMTTNVEGAIEDYYHRVVVDDKGNFQKWIYHKENGSEWRSVWQAVTEPCTVTALCGVYGFCNTTDSETHTYTCGCLPGYTPLDPTAPSKGCYLSEVKDLCPANSSGSNFMVEVKEIQDADISNEGYFYFDLVVLNNMDLDGCKKELLDDCLCMVAVSKGSDCYKKKWPIINAVRTIPKTNDFVMLVKVPLVANDKESSSLVILIVALISCSLLAALFLATTIYHHPVCLYILHKQAPPKPKPKPMDINLKAFSFQQLREATNGFKDKLGRGAYGTVYGGVLNLEDQQVDVAVKQLEQVDDQGDKEFVTEVQVIALTHHRNLVGLLGFCNEQSHRLLVYEKMENGTLSYFLFGEGDKPSWESRVRIVLEIARGLLYLHEECDNQIIHCDIKPQNVLLDSSYTAKISDFGLAKLLMKDKTRTNTNARGTVGYMAPEWLKNAPVTTKVDIYSFGVMLLEIIFCRKHIELHQIEDETMGDDLILIDWVMYLAKENNLRAPVIHHLEVESDIKRFERMAMVGLWCVNPNPTLRPSMKIVVQMLEGNVEVGVPTIDS 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5804g00002 780 Pfam D-mannose binding lectin 71 156 IPR001480 -
Vium5804g00002 780 Gene3D Transferase(Phosphotransferase) domain 1 570 773 - -
Vium5804g00002 780 CDD STKc_IRAK 497 769 - -
Vium5804g00002 780 ProSiteProfiles Bulb-type lectin domain profile. 22 140 IPR001480 -
Vium5804g00002 780 ProSiteProfiles Protein kinase domain profile. 491 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5804g00002 780 Gene3D - 20 140 IPR036426 -
Vium5804g00002 780 Gene3D Phosphorylase Kinase; domain 1 466 568 - -
Vium5804g00002 780 Gene3D - 143 283 - -
Vium5804g00002 780 FunFam S-receptor-like serine/threonine-protein kinase 462 569 - -
Vium5804g00002 780 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 201 IPR036426 -
Vium5804g00002 780 ProSitePatterns Protein kinases ATP-binding region signature. 497 522 IPR017441 GO:0005524
Vium5804g00002 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 570 775 - -
Vium5804g00002 780 SMART serkin_6 491 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5804g00002 780 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 34 775 - -
Vium5804g00002 780 Pfam Protein kinase domain 494 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5804g00002 780 SUPERFAMILY Protein kinase-like (PK-like) 470 768 IPR011009 -
Vium5804g00002 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Vium5804g00002 780 PIRSF SRK 1 780 IPR024171 GO:0004674
Vium5804g00002 780 SMART blect_4 30 142 IPR001480 -
Vium5804g00002 780 CDD B_lectin 41 142 IPR001480 -
Vium5804g00002 780 Pfam S-locus glycoprotein domain 240 310 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5804g00002 Vium-Chr5804 11749 14223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5804g00002 397 778 Receptor kinase-like Gene Family AT1G53440 38.046 2.28e-66 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium5804g00002 Pkinase 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5804g00002 - - pvu:PHAVU_002G046100g 1342.02