Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5804g00001 ATGTCTTTGGCTATCTTTCTTTCTTCCATTCTCCTACTACTTTCGTTTCTGAATGGTTTCCATGCCGTTGTACATCCAAACACCAGCATCACTGCTGGATCAAACTCTACATGGAAGTCACCCTCGGGTGATTTTGAATTTGGATTCCTCCATCTTCCCAGTGGTCTCTTTCTTGTGGGAATATGGTTTGGGAGAATCTCAGATATAACACTCGCATGGTACCTCTCTCCCCCTGTGGAAACAAATTCTCAAATCCAATTCACTTCTGCAGGAAACCTTGTGGTAGCCTACCAAAACGGAACTACTGCTATGACCATATACAATTCTGCACAAGGCGATGCTGCAACATCTGCCTACATGCAAGATGATGGCAATTTTGTGATCAAGGACTCCAACTTAGTATATGTGTGGCAGAGTTTCAACTCTCCAACCAACACCATCTTACCGGGCCAAACCTTGTTGAGTACTAAAACCCTCTTTTCCAAAGGGAAAGGACCTTCAAATTACTCGTTGGGAAGTTTCATGTTACAAATGCAAGAAGATGGCAACTTGGTGCTCAAAGCGTACCGGTGGGCAGACCCTGCATACTGGTTCACTTCACCCATAACCGCCAATATGACATTGGTGTTTAATGCTACCACTGCTCTCATGTACCGTGTCAACGATGCTGGGAACATCTTCACCCTAACCGAAATCACTCCAACCCCGGTGGAGGATTACTATCACCGTGCTACAATAGATGAGAATGGGAATTTCCAGCAATATGCTTATCACAAGAGGAATGGGACCGGTTGGAGGAGGGTTTGGAGAGCCGTGGAGGATCCCTGCAGAGTGAATGCTATCTGTGGTGTGTATGGCTTGTGCAGTTCTCCTGACAATGAATCAGTCAAGTGTGAGTGTATTCCAGGTTATATCCCTTTGGATGATCAAGATGTTTCCAAAGGGTGTCACCCACCAGCTGTCATCAATTACTGTGCAGAAAACAACTTCAAGCTCCAGGTATTTGACGACACTGATTTCCATTTTGATACTCATCTTGTTAGGTTGGCTGGTGTTGACTTCGAAAGTTGTAAGAAGGATGTAATAGATGATTGTAACATTGTTGCTGCAACTTATGACCATTCCACCTTCACATGTGCAAAGAAGAGACTGCCCTTACTGAATGCTAGAAATAGCTCTTCTTCAAAGGGATTGAAAGCACTGCTTAAAGTTGCTAACAGGATTGAGTCTGGAACATACAAACATCTAAAGAAGAAATTTTTTAATGTAAGAGTCCTTTTGAAGGTTCTTGTTGCAGTTACTGCAACTCTTGCCTGTTTCTTTGGTGCCCTTGCTGTCTACTATCATCCTTTCACTCGGAGACTATCAAGAAAAAAGAAGCATCTGAACGCAACAGCTATTGGAATCAACTTCAGAGAATTTACCTTTCAGGAGCTGCATGAAGCAACAGACGGATTTACTAAGATTCTTGGAAAGGGAGCTTCTGGCAGAGTCTATCGTGGTGCTTTAGTGATAGATGATGCAGAGATTGATGTAGCAGTCAAGAAACTAGAAAAGAAAATAGAGAAAAGTGAAAGTGAATTCACGACTGAGCTCAAAATTATTGGTCTTACCCATCATAGAAATTTGGTGAGGCTTTTGGGCTTTTGCACTGAGAGCAGCCATCTGATTCTTGTGTATGAGTTGATGCCAAATGGCGCCCTCTCTAGTATTTTGTTTGGAGAGCGGGAAAGGCCTCAATGGAGCCAGAGGATTGAAATGGCTCTTGGAGTCGCAAGAGGCTTACTATACTTGCACGAAGAGTGCAACACCCAAATCATACATTGCGACATAAAGCCCGAAAATGTGTTACTTGATGCCAATTACACAGCAAAGATTGCAGATTTTGGGCTGTCGAAGCTTTTGAACAAAGATCAAACTAGAACAAACACTAACTTAAGAGGAACGATAGGATACCTGGCACCTGAATGGCTAAGGAGTGCACCAGTAACTACAAAAGTTGACATATACAGTTTTGGGGTTATGTTATTGGAGATTATTTGCTGCAGGAGGCACGTTGAGATTTGTGAGGATGGAAAAGACAGTGAAGATGATGATTTGGTTCTTTCAAATTGGGTTTTAAGGTGTGTGGTGTCTAGGCAACTAGAGGTAGTGGTGAGACATGACACAGAAGTGCTGAATGATTTCAAGAAGTTTGAGGAAATGGCCTTGGTTGGACTATGGTGTGTTCATCCAAATCCTGCTTTAAGACCTTTGATGAAGCAAGTGATGCAAATGCTAGATGGAACAGTGGAAGTTGGTGTTCCTCCTTTGGTTTACGATATGATGATGTCAGATCATGGCCTGTAG 2349 0.4287 MSLAIFLSSILLLLSFLNGFHAVVHPNTSITAGSNSTWKSPSGDFEFGFLHLPSGLFLVGIWFGRISDITLAWYLSPPVETNSQIQFTSAGNLVVAYQNGTTAMTIYNSAQGDAATSAYMQDDGNFVIKDSNLVYVWQSFNSPTNTILPGQTLLSTKTLFSKGKGPSNYSLGSFMLQMQEDGNLVLKAYRWADPAYWFTSPITANMTLVFNATTALMYRVNDAGNIFTLTEITPTPVEDYYHRATIDENGNFQQYAYHKRNGTGWRRVWRAVEDPCRVNAICGVYGLCSSPDNESVKCECIPGYIPLDDQDVSKGCHPPAVINYCAENNFKLQVFDDTDFHFDTHLVRLAGVDFESCKKDVIDDCNIVAATYDHSTFTCAKKRLPLLNARNSSSSKGLKALLKVANRIESGTYKHLKKKFFNVRVLLKVLVAVTATLACFFGALAVYYHPFTRRLSRKKKHLNATAIGINFREFTFQELHEATDGFTKILGKGASGRVYRGALVIDDAEIDVAVKKLEKKIEKSESEFTTELKIIGLTHHRNLVRLLGFCTESSHLILVYELMPNGALSSILFGERERPQWSQRIEMALGVARGLLYLHEECNTQIIHCDIKPENVLLDANYTAKIADFGLSKLLNKDQTRTNTNLRGTIGYLAPEWLRSAPVTTKVDIYSFGVMLLEIICCRRHVEICEDGKDSEDDDLVLSNWVLRCVVSRQLEVVVRHDTEVLNDFKKFEEMALVGLWCVHPNPALRPLMKQVMQMLDGTVEVGVPPLVYDMMMSDHGL 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5804g00001 782 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 31 770 - -
Vium5804g00001 782 Gene3D Transferase(Phosphotransferase) domain 1 563 766 - -
Vium5804g00001 782 ProSiteProfiles Protein kinase domain profile. 484 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5804g00001 782 FunFam S-receptor-like serine/threonine-protein kinase 453 562 - -
Vium5804g00001 782 Pfam S-locus glycoprotein domain 238 306 IPR000858 GO:0048544
Vium5804g00001 782 CDD STKc_IRAK 490 762 - -
Vium5804g00001 782 Pfam Protein kinase domain 488 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5804g00001 782 SMART serkin_6 484 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5804g00001 782 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 201 IPR036426 -
Vium5804g00001 782 ProSiteProfiles Bulb-type lectin domain profile. 21 141 IPR001480 -
Vium5804g00001 782 Gene3D - 143 281 - -
Vium5804g00001 782 Gene3D Phosphorylase Kinase; domain 1 456 562 - -
Vium5804g00001 782 SMART blect_4 29 143 IPR001480 -
Vium5804g00001 782 PIRSF SRK 1 780 IPR024171 GO:0004674
Vium5804g00001 782 ProSitePatterns Protein kinases ATP-binding region signature. 490 516 IPR017441 GO:0005524
Vium5804g00001 782 Gene3D - 16 142 IPR036426 -
Vium5804g00001 782 Pfam D-mannose binding lectin 79 157 IPR001480 -
Vium5804g00001 782 SUPERFAMILY Protein kinase-like (PK-like) 463 760 IPR011009 -
Vium5804g00001 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 606 618 IPR008271 GO:0004672|GO:0006468
Vium5804g00001 782 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 563 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5804g00001 Vium-Chr5804 67 2760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5804g00001 431 765 Receptor kinase-like Gene Family AT5G45780 38.235 4.65e-68 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium5804g00001 Pkinase 6.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5804g00001 - - gmx:102662509 1187.94