Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5802g00002 ATGGCTGATTCTGCCTCAGCCTCCTCTTCCACCAGAATGTGGTGCTCCGTCCCGGAACGCGTTCAGCTGCATGCGGCCATGTTGGCCCTGCAGTTTGGCTACGCCGGATTCCACGTCGTCTCTCGAGCTGCCCTTAACATGGGCATTAGCAAACTTGTTTTCCCAGTCTACCGCAACGTTATTGCCCTATTCCTGCTCCTTCCTTTTGCCTACTTCTTGGAAAAGAAGGAGAGGCCTGCCATTACTTTAAACTTCCTCTCACAGTTCTTTCTTCTGGCGCTTGTCGGGATTACTGCGAACCAAGGTTTCTACTTGCTTGGTTTGGACAACACATCACCAACGTTTGCATCAGCGATACAAAACTCTGTCCCAGCCATTACATTTCTGATGGCAGCCATATTCAGGATAGAGCAAGTTCGGGTGAATCGAAAGGATGGGATAGCGAAGGTTGCGGGAACGGTATTCTGTGTGGCTGGGGCATCGGTGATTACCCTATATAAGGGTCCAACAATATATAGCCCAACTCCGCCACTGAACGCTAGCCCAGTAATTGACTTTGGCTCACTCTCGCTGGGAGATGCAAAGGGAAAGAACTGGACCCTCGGCTGCCTCTATCTCATAGGACACTGCTTGTCCTGGTCTGGTTGGCTTGTGTTGCAAGCACCTGTAATCAAGAAGTACCCTGCCCGCCTCTCTCTCACTTCCTATACATGTTTCTTTGGCCTCATACAATTCTTCGTCATTGCTCTCATCGTTGAAAGAGATGCTCAGGCTTGGATTTTCCAATCTGGTGGAGAAGTTTTCACCATCTTCTATGCGGGAGTGGTGGCATCTGGAATTGCCTTCGCTGTTCAGACATGGTGCGTCGACAGAGGTGGCCCTGTGTTCGTTGCAGTGTATCAACCTGTTCAAACTCTCGTTGTCGCTATTATGGCTTCCCTTGCTTTAGGCGAAGAGTTCTACTTGGGAGGGATCATAGGAGCAGTGTTGATCGTTGTGGGACTGTACTTTGTGTTGTGGGGCAAAAACGAAGAGAGAAAGTTTGCAAGGGAACAGGCTGCGATCACGTCCACCCCAGAGCACAGTGGCATCAGATCCGCAAGCCATGCCAAAACATCACTCACTCAGCCTCTTCTCCTCCCTTCATCTACGGAGAACGTGTGA 1164 0.5034 MADSASASSSTRMWCSVPERVQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALFLLLPFAYFLEKKERPAITLNFLSQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAAIFRIEQVRVNRKDGIAKVAGTVFCVAGASVITLYKGPTIYSPTPPLNASPVIDFGSLSLGDAKGKNWTLGCLYLIGHCLSWSGWLVLQAPVIKKYPARLSLTSYTCFFGLIQFFVIALIVERDAQAWIFQSGGEVFTIFYAGVVASGIAFAVQTWCVDRGGPVFVAVYQPVQTLVVAIMASLALGEEFYLGGIIGAVLIVVGLYFVLWGKNEERKFAREQAAITSTPEHSGIRSASHAKTSLTQPLLLPSSTENV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5802g00002 387 PANTHER WAT1-RELATED PROTEIN 25 351 IPR030184 GO:0016020|GO:0022857
Vium5802g00002 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 57 167 - -
Vium5802g00002 387 Pfam EamA-like transporter family 201 339 IPR000620 GO:0016020
Vium5802g00002 387 Pfam EamA-like transporter family 27 164 IPR000620 GO:0016020
Vium5802g00002 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5802g00002 Vium-Chr5802 2654 5736 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5802g00002 1 387 Nodulin-like Gene Family AT1G75500 74.555 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5802g00002 - - gmx:100786714 684.485