Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5802g00001 ATGGCTGATTCTGCCTCAGCCTCCTCTTCCACCAGAATGTGGTGCTCCGTCCCGGAACGCGTTCAGCTGCATGCGGCCATGTTGGCCCTGCAGTTTGGCTACGCCGGATTCCACGTCGTCTCTCGAGCTGCCCTTAACATGGGCATTAGCAAACTTGTTTTCCCAGTCTACCGCAACGTTATTGCCCTATTCCTGCTCCTTCCTTTTGCCTACTTCTTGGAAAAGAAGGAGAGGCCTGCCATTACTTTAAACTTCCTCTCACAGTTCTTTCTTCTGGCGCTTGTCGGGATTACTGCGAACCAAGGTTTCTACTTGCTTGGTTTGGACAACACATCACCAACGTTTGCATCAGCGATACAAAACTCTGTCCCAGCCATTACATTTCTGATGGCAGCCATATTCAGGATAGAGCAAGTTCGGGTG 423 0.5059 MADSASASSSTRMWCSVPERVQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALFLLLPFAYFLEKKERPAITLNFLSQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAAIFRIEQVRV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5802g00001 141 SUPERFAMILY Multidrug resistance efflux transporter EmrE 57 135 - -
Vium5802g00001 141 Pfam EamA-like transporter family 27 138 IPR000620 GO:0016020
Vium5802g00001 141 PANTHER WAT1-RELATED PROTEIN 25 140 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5802g00001 Vium-Chr5802 6 963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5802g00001 1 141 Nodulin-like Gene Family AT1G75500 81.560 3.06e-77 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5802g00001 - - vum:124841706 268.47