Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5801g00001 ATGATGCCGGGACACCGCTCGAAGTCGGAGAAGCATGACGGCGGCGAGAAGCAGCTCCGACGGGACCCCTACGAGGTCCTTGGGGTCTCGCGCAACTCTACGGATCAGGAAATCAAAACCGCGTACCGAAAAATGGCGCTCAAATATCATCCGGACAAGAATGCAAATGATCCTAAAGCAGCTGATATGTTTAAAGAGGTTACCTTTTCTTATAATATCCTCTCAGATCCTGACAAACGGCGTCAATATGACTCGGCTGGCTTTGAGGCTGTTGAATCAGACAACCAAGAGTTGGAGTTAGATCTTTCAAGTTTGGGGGCTGTCAATACAATGTTTGCAGCGCTTTTTAGTAAACTTGGTGTGCCAATTAAGACAACTGTATCTGCATCTGTTTTGGAAGAGGCACTCAATGGTTTAGTGACCATTCGTCCGCTTCCATTAGGTCATTATGTATCTAAAAGGGTTGAGAAGCAATGTGCACACTTCTATTCAGTTACAATAACAGAAGAGGAAGCACGAGCTGGATTTGTTTGTCGAGTACATTCATCAGACAAAAGCAAGTTCAAGTTACTATATTTTGATCAGGAAGACAATGGTGGTTTAAGTCTTGCACTCCAGGAAGACAGTGCAAAAACAGGGAAGGTTACCTCTGCTGGGATGTTCTTTCTTGGGTTTCCTGTTTATAGATTGGACCAAACAATGAACTCTATAGCTGCTGCTAAGGATCCAGATACATCGTTTTTCAGAAAGCTGGATGGGTTTCAGCCTTGTGAATTAAATGAATTGAAGGCTGGTACCCATGTATTTGCTGTTTATGGTGACAACTTTTTCAAAAGTGCAAATTATACAATAGAAGCCCTATGTGCTGCACCTTTTAGTGAAGAAAAAGAAAATTTAAGAAGTATAGAAGCTCAAATCTTGTCTAAAAGGGCCGAAATATCAAAGTTTGAGGCAGAATATCGAGAGGTTCTGGCTCAATTCTCAGAGATGACAAGTAGATATGCACATGAAATTCAATCAATTGACGAACTACTGAAGCATAGGAATGAAATACATGCATCATACACTATTACTCCCTTTAAACGGAGTACAAGTAAGAGCAGAAGTAAAAGTTCTTCCAAGGAAAACAAAGAAGATGGCCAAACAAGAGAGAAGAGGAATACAAGAGATCGGCCAAAGAAGAAGAAATGGTATAACATCCACTTAAGAGTCGATAAGAGAAAGGCTTGCTAA 1233 0.4128 MMPGHRSKSEKHDGGEKQLRRDPYEVLGVSRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQYDSAGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSASVLEEALNGLVTIRPLPLGHYVSKRVEKQCAHFYSVTITEEEARAGFVCRVHSSDKSKFKLLYFDQEDNGGLSLALQEDSAKTGKVTSAGMFFLGFPVYRLDQTMNSIAAAKDPDTSFFRKLDGFQPCELNELKAGTHVFAVYGDNFFKSANYTIEALCAAPFSEEKENLRSIEAQILSKRAEISKFEAEYREVLAQFSEMTSRYAHEIQSIDELLKHRNEIHASYTITPFKRSTSKSRSKSSSKENKEDGQTREKRNTRDRPKKKKWYNIHLRVDKRKAC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5801g00001 410 FunFam Chaperone protein dnaJ 16 5 104 - -
Vium5801g00001 410 CDD DnaJ 22 76 IPR001623 -
Vium5801g00001 410 Gene3D DnaJ domain 6 105 IPR036869 -
Vium5801g00001 410 Coils Coil 299 319 - -
Vium5801g00001 410 MobiDBLite consensus disorder prediction 368 387 - -
Vium5801g00001 410 ProSitePatterns Nt-dnaJ domain signature. 64 83 IPR018253 -
Vium5801g00001 410 PRINTS DnaJ domain signature 24 42 IPR001623 -
Vium5801g00001 410 PRINTS DnaJ domain signature 59 79 IPR001623 -
Vium5801g00001 410 PRINTS DnaJ domain signature 79 98 IPR001623 -
Vium5801g00001 410 PRINTS DnaJ domain signature 42 57 IPR001623 -
Vium5801g00001 410 Pfam DnaJ domain 22 84 IPR001623 -
Vium5801g00001 410 MobiDBLite consensus disorder prediction 1 24 - -
Vium5801g00001 410 SUPERFAMILY Chaperone J-domain 21 91 IPR036869 -
Vium5801g00001 410 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 2 409 - -
Vium5801g00001 410 SMART dnaj_3 21 79 IPR001623 -
Vium5801g00001 410 ProSiteProfiles dnaJ domain profile. 22 87 IPR001623 -
Vium5801g00001 410 MobiDBLite consensus disorder prediction 1 30 - -
Vium5801g00001 410 MobiDBLite consensus disorder prediction 356 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5801g00001 Vium-Chr5801 13104 17897 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5801g00001 20 85 C2H2 Transcription Factor Family AT1G74250 42.254 5.47e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5801g00001 - - gmx:100800929 752.666