Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5794g00003 ATGTACAAAGTAATTTGCAATTCTGATGAACCTGCTTTTTCCTCACTCACATTCAGCGTCCCAATGAAGTTTATTGATTGCCTTATGAGAATGAGGTGTAATCTCTTTGAGGGCTGCTTCAGTAGCACTTCTGACACATTTCAAAAGCAGAGTAAATGGAAAATCTTGCCCTACAAGAAACTTGCAAAAGTCACAGATAACTTCGATCAGTCTCATTGTCTTGGGAAAAGAGGCTTTGCCACTGAATATTACGGAAAACTTGCAGATGGGCGTGAGATTACAATCCAGTGCTTCAACGAAGACAAGCACCACATATTGCAACAGTTTATCAATGAAACTAGTATCCTAAATTACTTGCCTCACAAAAACATTGTGTCAATTTATGGATGTGCTTCTCATCACGAAGAATCTATGCTAGTCCATGAATACTTATCCAATGGAAACCTTGCTGCTCATCTTAAAACTGAAGACGAAAACACCACATTACCTTGGCTGACACGATTTGACGTAGCCATTGATATTGCAAATGCATTGGACTATCTTCACTGTAATGGCATCATCCACCGCAATGTGAAGTCCAGCAATATTCTCCTAGATGTGAACTTTTCTGCTAAACTTGCAAACCTTCATTTATCATGCAAACTTCCAGATGGAGTTCCTGTCTATGCAGCCCATGTTACTAATGATATAATTGGAACATGTGGTTACATCGACCCAGATTATTTGACAAAAGGCCAGCTTAGTGTAAAAAATGATGTTTATAGCTTTGGGGTGGTGCTGTGTGAGCTTCTATCATCAAAGGTGGCAAAATCCTGGGTTCTGAATGAGGAGGACGATCTCGCTACACTTTTAAGAACAAAAATTGAAAAGCAAGCTGTGGTGGAACTGTTGGATCCAAGACTTGGCTTCCAATCTAACCATAAGATCAAGAGGATGATGACTGCTACAGCTGAGCTTGCACTGTTGTGCATGCAATGTCCACAAGAATTAAGGCCAAGCATGGAACAGGTGCTAGAGATTCTGAAAGGTATAAAGCAAGGGAGACAGGAAACAAACGCAACAAAAGCTTTGAAAATCTTCCACCATGGTGAACTCGAAGAAGCTACAAACAATTTTGATACTTGCCTTGGAAAGGGAGGCTATGGCACCGTGTACTATGGAAAACTTAAGGATGGAAGAGAGGTGGCAATAAAATGTTTCCATGAAGAGAGTGAGACGGAAAAGATCATTGAGCAATTCATGAAAGAAACTGAGGTCTTGGTTTGGTTGCAGCATAAAAATCTGGTTTTACTTTATGGTCGCACTTCTCGCCATAGCAACAAACACATGCTAGTGTATGAATACATCTCCAATGGCACTCTTTCTAAACATCTGCATGACTCTTCCTGTGATAAACTACCATGGCATACTAGATTGAACATTGCCATCGAAACTGCAACTGCACTGGTATATCTGCATGACTCAGGTATCATCCACCGAGATGTGAAAGGGAGTAACATTCTGTTGGACGAAAATTTTACTGTTAAAGTTGCAGATTTTGGATTCTCACGGTATCTCCCAGATTATGCCACGCACGTTTCCACTATCCCAGTAGGAACTCGTGCTTACATAGATCCTGACTACTATGAATCTGGAAGGGTCTGTGACAAAAGTGATGTCTATAGTTTTGGGGTGGTCTTGTTTGAACTTATATCTTCCAACTCTCCAAGTTTAGTTGAGGGAACAGATTTTACTCTTGCACAGTTTGCGAAGAGAAAAATATTAAACAAGGAATTAAACGCGGTAGTGGATCCAAGCTTTTGGTTTGGTGTTGACAGAAACATGATGGAAATGATAACAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGTACTCAGACCTTCCATGAAACAGGTGCTGGAGACACTTGAGGGCATTAGCAAAGGAACATGGGGATTCAACCAGATAACATAG 1965 0.4087 MYKVICNSDEPAFSSLTFSVPMKFIDCLMRMRCNLFEGCFSSTSDTFQKQSKWKILPYKKLAKVTDNFDQSHCLGKRGFATEYYGKLADGREITIQCFNEDKHHILQQFINETSILNYLPHKNIVSIYGCASHHEESMLVHEYLSNGNLAAHLKTEDENTTLPWLTRFDVAIDIANALDYLHCNGIIHRNVKSSNILLDVNFSAKLANLHLSCKLPDGVPVYAAHVTNDIIGTCGYIDPDYLTKGQLSVKNDVYSFGVVLCELLSSKVAKSWVLNEEDDLATLLRTKIEKQAVVELLDPRLGFQSNHKIKRMMTATAELALLCMQCPQELRPSMEQVLEILKGIKQGRQETNATKALKIFHHGELEEATNNFDTCLGKGGYGTVYYGKLKDGREVAIKCFHEESETEKIIEQFMKETEVLVWLQHKNLVLLYGRTSRHSNKHMLVYEYISNGTLSKHLHDSSCDKLPWHTRLNIAIETATALVYLHDSGIIHRDVKGSNILLDENFTVKVADFGFSRYLPDYATHVSTIPVGTRAYIDPDYYESGRVCDKSDVYSFGVVLFELISSNSPSLVEGTDFTLAQFAKRKILNKELNAVVDPSFWFGVDRNMMEMITAVAELAFQCVQCPKVLRPSMKQVLETLEGISKGTWGFNQIT 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5794g00003 654 FunFam Wall-associated receptor kinase 3 449 653 - -
Vium5794g00003 654 SUPERFAMILY Protein kinase-like (PK-like) 45 341 IPR011009 -
Vium5794g00003 654 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 144 354 - -
Vium5794g00003 654 ProSiteProfiles Protein kinase domain profile. 68 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5794g00003 654 Gene3D Transferase(Phosphotransferase) domain 1 144 360 - -
Vium5794g00003 654 Gene3D Transferase(Phosphotransferase) domain 1 449 648 - -
Vium5794g00003 654 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 356 647 IPR044652 GO:0004672
Vium5794g00003 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Vium5794g00003 654 Gene3D Phosphorylase Kinase; domain 1 40 143 - -
Vium5794g00003 654 Pfam Protein tyrosine and serine/threonine kinase 373 639 IPR001245 GO:0004672|GO:0006468
Vium5794g00003 654 Pfam Protein tyrosine and serine/threonine kinase 74 341 IPR001245 GO:0004672|GO:0006468
Vium5794g00003 654 ProSitePatterns Protein kinases ATP-binding region signature. 376 398 IPR017441 GO:0005524
Vium5794g00003 654 FunFam LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform A 40 143 - -
Vium5794g00003 654 SUPERFAMILY Protein kinase-like (PK-like) 354 644 IPR011009 -
Vium5794g00003 654 SMART serkin_6 68 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5794g00003 654 SMART serkin_6 370 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5794g00003 654 Gene3D Phosphorylase Kinase; domain 1 361 448 - -
Vium5794g00003 654 ProSiteProfiles Protein kinase domain profile. 370 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5794g00003 Vium-Chr5794 6773 10563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5794g00003 357 643 Receptor kinase-like Gene Family AT1G25390 52.041 6.85e-89 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium5794g00003 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5794g00003 - - vun:114181918 1226.46