Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5794g00002 ATGAAGTTTATTGATTGCCTTATGAGAATGAGGTGTAATCTCTTTGAGGGCTGCTTCAGTAGCACTTCTGACACATTTCAAAAGCAGAGTAAATGGAAAATCTTGCCCTACAAGAAACTTGCAAAAGTCACAGATAACTTCGATCAGTCTCATTGTCTTGGGAAAAGAGGCTTTGCCACTGAATATTACGGAAAACTTGCAGATGGGCGTGAGATTACAATCCAGTGCTTCAACGAAGACAAGCACCACATATTGCAACAGTTTATCAATGAAACTAGTATCCTAAATTACTTGCCTCACAAAAACATTGTGTCAATTTATGGATGTGCTTCTCATCACGAAGAATCTATGCTAGTCCATGAATACTTATCCAATGGAAACCTTGCTGCTCATCTTAAAACTGAAGACGAAAACACCACATTACCTTGGCTGACACGATTTGACGTAGCCATTGATATTGCAAATGCATTGGACTATCTTCACTGTAATGGCATCATCCACCGCAATGTGAAGTCCAGCAATATTCTCCTAGATGTGAACTTTTCTGCTAAACTTGCAAACCTTCATTTATCATGCAAACTTCCAGATGGAGTTCCTGTCTATGCAGCCCATGTTACTAATGATATAATTGGAACATGTGGTTACATCGACCCAGATTATTTGACAAAAGGCCAGCTTAGTGTAAAAAATGATGTTTATAGCTTTGGGGTGGTGCTGTGTGAGCTTCTATCATCAAAGGTGGCAAAATCCTGGGTTCTGAATGAGGAGGACGATCTCGCTACACTTTTAAGAACAAAAATTGAAAAGCAAGCTGTGGTGGAACTGTTGGATCCAAGACTTGGCTTCCAATCTAACCATAAGATCAAGAGGATGATGACTGCTACAGCTGAGCTTGCACTGTTGTGCATGCAATGTCCACAAGAATTAAGGCCAAGCATGGAACAGGTGCTAGAGATTCTGAAAGGTATAAAGCAAGGGAGACAGGAAACAAACGCAACAAAAGCTTTGAAAATCTTCCACCATGGTGAACTCGAAGAAGCTACAAACAATTTTGATACTTGCCTTGGAAAGGGAGGCTATGGCACCGTGTACTATGGAAAACTTAAGGATGGAAGAGAGGTGGCAATAAAATGTTTCCATGAAGAGAGTGAGACGGAAAAGATCATTGAGCAATTCATGAAAGAAACTGAGGTCTTGGTTTGGTTGCAGCATAAAAATCTGGTTTTACTTTATGGTCGCACTTCTCGCCATAGCAACAAACACATGCTAGTGTATGAATACATCTCCAATGGCACTCTTTCTAAACATCTGCATGACTCTTCCTGTGATAAACTACCATGGCATACTAGATTGAACATTGCCATCGAAACTGCAACTGCACTGGTATATCTGCATGACTCAGGTATCATCCACCGAGATGTGAAAGGGAGTAACATTCTGTTGGACGAAAATTTTACTGTTAAAGTTGCAGATTTTGGATTCTCACGGTATCTCCCAGATTATGCCACGCACGTTTCCACTATCCCAGTAGGAACTCGTGCTTACATAGATCCTGACTACTATGAATCTGGAAGGGTCTGTGACAAAAGTGATGTCTATAGTTTTGGGGTGGTCTTGTTTGAACTTATATCTTCCAACTCTCCAAGTTTAGTTGAGGGAACAGATTTTACTCTTGCACAGTTTGCGAAGAGAAAAATATTAAACAAGGAATTAAACGCGGTAGTGGATCCAAGCTTTTGGTTTGGTGTTGACAGAAACATGATGGAAATGATAACAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGTACTCAGACCTTCCATGAAACAGGTGCTGGAGACACTTGAGGGCATTAGCAAAGGAACATGGGGATTCAACCAGATAACATAG 1902 0.409 MKFIDCLMRMRCNLFEGCFSSTSDTFQKQSKWKILPYKKLAKVTDNFDQSHCLGKRGFATEYYGKLADGREITIQCFNEDKHHILQQFINETSILNYLPHKNIVSIYGCASHHEESMLVHEYLSNGNLAAHLKTEDENTTLPWLTRFDVAIDIANALDYLHCNGIIHRNVKSSNILLDVNFSAKLANLHLSCKLPDGVPVYAAHVTNDIIGTCGYIDPDYLTKGQLSVKNDVYSFGVVLCELLSSKVAKSWVLNEEDDLATLLRTKIEKQAVVELLDPRLGFQSNHKIKRMMTATAELALLCMQCPQELRPSMEQVLEILKGIKQGRQETNATKALKIFHHGELEEATNNFDTCLGKGGYGTVYYGKLKDGREVAIKCFHEESETEKIIEQFMKETEVLVWLQHKNLVLLYGRTSRHSNKHMLVYEYISNGTLSKHLHDSSCDKLPWHTRLNIAIETATALVYLHDSGIIHRDVKGSNILLDENFTVKVADFGFSRYLPDYATHVSTIPVGTRAYIDPDYYESGRVCDKSDVYSFGVVLFELISSNSPSLVEGTDFTLAQFAKRKILNKELNAVVDPSFWFGVDRNMMEMITAVAELAFQCVQCPKVLRPSMKQVLETLEGISKGTWGFNQIT 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5794g00002 633 SUPERFAMILY Protein kinase-like (PK-like) 333 623 IPR011009 -
Vium5794g00002 633 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Vium5794g00002 633 FunFam LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform A 19 122 - -
Vium5794g00002 633 Gene3D Phosphorylase Kinase; domain 1 340 427 - -
Vium5794g00002 633 ProSiteProfiles Protein kinase domain profile. 349 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5794g00002 633 Pfam Protein tyrosine and serine/threonine kinase 53 320 IPR001245 GO:0004672|GO:0006468
Vium5794g00002 633 Pfam Protein tyrosine and serine/threonine kinase 352 618 IPR001245 GO:0004672|GO:0006468
Vium5794g00002 633 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 335 626 IPR044652 GO:0004672
Vium5794g00002 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Vium5794g00002 633 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 123 333 - -
Vium5794g00002 633 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Vium5794g00002 633 SUPERFAMILY Protein kinase-like (PK-like) 24 320 IPR011009 -
Vium5794g00002 633 ProSiteProfiles Protein kinase domain profile. 47 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5794g00002 633 Gene3D Transferase(Phosphotransferase) domain 1 428 627 - -
Vium5794g00002 633 Gene3D Transferase(Phosphotransferase) domain 1 123 339 - -
Vium5794g00002 633 SMART serkin_6 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5794g00002 633 SMART serkin_6 349 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5794g00002 633 FunFam Wall-associated receptor kinase 3 428 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5794g00002 Vium-Chr5794 6773 10563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5794g00002 336 622 Receptor kinase-like Gene Family AT1G25390 52.041 5.19e-89 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium5794g00002 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5794g00002 - - vun:114181918 1223.76