Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5788g00009 ATGGGTAAAGCACCTTGTTGTGAGAAACATGGAGTCAAAAGGGGAGCTTGGACTCCTGAAGAAGACCAAGCCTTGGTTGACTACATCAAGGAGCATGGTCATGGAAGTTGGCGTACACTTCCCAAACATGCAGGTCTCTTACGATGTGGAAAAAGTTGTCGGCTTCGGTGGATAAACTATCTTCGCCCTGGTATCAAGCGTGGCCCGTTTACCAGTGAAGAAGAAAGCACAATTGTTCAACTCCATGGCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAATTACCTGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATCTAAAGAAGCGTCTCCTTCGATCATGTCATTCCCTAAGAGAAAAACAGTCGTGTCTGGTTCTGGATCAAACTATTGTTAAGTCTGAATCTCCTTCTACGCGTCACATGGTACAGTGGGAAAGTGTAAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCCTCGTTCCTCAATTCATGGCCGAAGAGTTCAACATGCCCTGATCATTTTCTTCATCTTTGGCATTCTGAGGTTGGAAAGTCATTTCGCATGGTCAAGGGAAAGGAAGGGATTGTGAGTCAAAGTCCTGTCTCACATCCTTCATCCTCATCTAAATTGGAGTCTTGTTCAGATGTGTCATTGCAGGTGAAAAACAGTACTAGTAGCCTCTATCCATGCATTGAGGATGTGAACATGGTTCATGAACAGATAAGTAGCTACAAACCAAAGCTTGATGACACGGCTGGGTCTGACTCAGGCAATTATGAATTTCTTGATACTTCAGATTCTGCATTAAAGCACCTACTACATATCTCTGATGATGTTGGATTCCTGGGACAGAATGATAATTTCTTGAATCTCCTTGATGCAACATGTGACCAAGATAGTTTCTTTCATATCTCTTCAGAGAAAGGCAATCTTTGA 957 0.4347 MGKAPCCEKHGVKRGAWTPEEDQALVDYIKEHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTSEEESTIVQLHGMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRLLRSCHSLREKQSCLVLDQTIVKSESPSTRHMVQWESVRVEAEARLSMESSFLNSWPKSSTCPDHFLHLWHSEVGKSFRMVKGKEGIVSQSPVSHPSSSSKLESCSDVSLQVKNSTSSLYPCIEDVNMVHEQISSYKPKLDDTAGSDSGNYEFLDTSDSALKHLLHISDDVGFLGQNDNFLNLLDATCDQDSFFHISSEKGNL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5788g00009 318 CDD SANT 69 112 IPR001005 -
Vium5788g00009 318 FunFam MYB transcription factor 69 116 - -
Vium5788g00009 318 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium5788g00009 318 CDD SANT 16 61 IPR001005 -
Vium5788g00009 318 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium5788g00009 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 246 - -
Vium5788g00009 318 Gene3D - 14 66 - -
Vium5788g00009 318 FunFam Myb transcription factor 11 67 - -
Vium5788g00009 318 SMART sant 13 63 IPR001005 -
Vium5788g00009 318 SMART sant 66 114 IPR001005 -
Vium5788g00009 318 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium5788g00009 318 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vium5788g00009 318 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium5788g00009 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium5788g00009 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium5788g00009 318 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5788g00009 Vium-Chr5788 41843 44806 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5788g00009 1 292 MYB Transcription Factor Family AT3G61250 51.656 1.70e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium5788g00009 Myb_DNA-binding 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5788g00009 K09422 - gmx:100782075 525.398