Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5788g00005 ATGGGGTGCCAGCCATTGGAAAAGGGAAAACCAAAACATAAGAAGGGGTTATGGTCACCAGAAGAAGACAATAAACTCAGAAACTACATCCTTAAACAAGGTCATGGCTGTTGGAGTTCTGTTCCCATTAAGGCAGGCTTGCAAAGAAGTGGAAAGAGTTGCAGACTAAGATGGATAAACTATCTGAGACCAGGACTAAAGAGAGGGAAGTTCACCAAACAGGAAGAAGAGACAATCCTCACCCTTCACCACATGCTAGGCAACAAGTGGTCACAGATATCACAGCATTTGCCAGGAAGAACAGATAATGAGATTAAAAACTACTGGCATTCATATTTGAAAAAGAAAGAGGCAAAAGCTAAGGAAATGGATTCTCATAACCAAATAAAGTATGCTAGCTCAAGCTCAGATACCATGGAGTCTTCAAACTCTCTCCAAAACCTTGCAACTCAAGGTACACAGAGTTGTAACTTCACCAAAGAGGCTAGCCAAAGCTCCTTGCCAAAACTGTTATTTGCTGAGTGGCTTTCATTGGATCAAGTAAACTCTGCAAATTCAATTGACTCTTTTGGTTTGAGGAATGGATTTGATCAAAATTCAACTATTCAGGAGGCTGCAATCCATGATATGTCAGATATACCCTTTGGTGGAGGGTACCATAGATGCTTGGCTAACATTTCAGCCCCTGAGATTTTGAATTCAGAGCTGAAGTATGCAAATCAGATGGCGGAAAATGGTTTCATCCATTGTGTGCCTGGAGTTGACTTGATGAGTAGCAATTTCAGCATGAGCAATGATGCGATAATGTACATATGA 816 0.4105 MGCQPLEKGKPKHKKGLWSPEEDNKLRNYILKQGHGCWSSVPIKAGLQRSGKSCRLRWINYLRPGLKRGKFTKQEEETILTLHHMLGNKWSQISQHLPGRTDNEIKNYWHSYLKKKEAKAKEMDSHNQIKYASSSSDTMESSNSLQNLATQGTQSCNFTKEASQSSLPKLLFAEWLSLDQVNSANSIDSFGLRNGFDQNSTIQEAAIHDMSDIPFGGGYHRCLANISAPEILNSELKYANQMAENGFIHCVPGVDLMSSNFSMSNDAIMYI 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5788g00005 271 CDD SANT 18 62 IPR001005 -
Vium5788g00005 271 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vium5788g00005 271 SMART sant 67 115 IPR001005 -
Vium5788g00005 271 SMART sant 14 64 IPR001005 -
Vium5788g00005 271 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 215 224 IPR017972 GO:0005506|GO:0016705
Vium5788g00005 271 Gene3D - 15 67 - -
Vium5788g00005 271 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vium5788g00005 271 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vium5788g00005 271 Gene3D - 70 116 - -
Vium5788g00005 271 FunFam MYB transcription factor 70 141 - -
Vium5788g00005 271 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vium5788g00005 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vium5788g00005 271 FunFam MYB transcription factor 12 68 - -
Vium5788g00005 271 CDD SANT 70 113 IPR001005 -
Vium5788g00005 271 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vium5788g00005 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vium5788g00005 271 PANTHER MYB DOMAIN PROTEIN 55 8 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5788g00005 Vium-Chr5788 34927 37597 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5788g00005 8 176 MYB Transcription Factor Family AT3G48920 57.310 2.45e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium5788g00005 Myb_DNA-binding 7.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5788g00005 K09422 - gmx:778167 486.108