Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5782g00001 ATGATGGAAGAACCTGTTGTGGTTAGCAAAGGAGACGAGCCTTTGGATTTGCCTCCAGGTTTCAGGTTCCACCCCACAGATGAAGAGATCATCACATGTTACCTCACAGAGAAAGTGCTGGATAGAGCCTTCAGTGCAACTGCTATTGGAGAAGCTGATTTGAACAAGTGTGAGCCTTGGGACTTGCCCAAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTCTGCCAAATGGATAGGAAGTATCCAACAGGGTTGAGAACCAATAGAGCAACACAATCTGGGTATTGGAAGGCCACTGGGAAGGACAAAGAGATTTTCAAAGGGAAGAACAATCTTGTGGGGATGAAGAAGACCCTTGTGTTCTATAGAGGAAGAGCCCCAAAGGGAGAGAAAACAAATTGGGTTATGCACGAATTCAGATTGGAAGGAAAATTCGCATGTTACAACCTTCCCAAGGCTGCAAAGGATGAATGGGTTGTGTGCAAGGTTTTCCACAAGAGCAACACTGATGTTAACAAAAGGGTACTCCCAATTAACCCTGGCATTGGCCTTCTGAGAATGAACTCAGTAGGAGAAGATCTATTTGATTTCTCTTCACTTCCACCTCTTGTGGATCCTCTCTTTGATCAACCCTCACACAAAAAACACATTGACAATGATTTCAAGGGTACTAGTAATAGTACTAACACTTACACACCTTCATCAGCTTCATCATCAGCAGCGGCTGAACCACCCTATTACCTTCCCAATTTCATCAACAACAATCATCACATGCAGATGAAGATGATGATGATGATGAAGCCTGAAGAACACAGAATCTGTGAGACACCTCTCACCAACGTTAACTATGCCTCCACCTGCCAAGGGAATCTCAACTCTAACAACAACCCAATGGGAATTGGCACAAGCAATCATAACCCCCTTCAAAACACAACCTCACCCTTCAACATGTTCCAAGATTACTATATGCACCAAGGCAACAACAGTTTCCAGCAGTGCAAGAGGGAGCAATTCTCCAACACTGTGGTCAGTGCCTCTCAAGACACGTGCCTCAGTAACGACAGAAACACTGACACTTCCTCGGTGGTGTCAAAGCAAGACAACATGGGAAGGAACAAGGCATTGTACGAGGATCTTGATCAAGCTCCTTCATCAGTTGCTACCCTCTCAGATTTGGATTGCCTCTGGGATGATTACTGA 1206 0.4478 MMEEPVVVSKGDEPLDLPPGFRFHPTDEEIITCYLTEKVLDRAFSATAIGEADLNKCEPWDLPKKAKMGEKDWYFFCQMDRKYPTGLRTNRATQSGYWKATGKDKEIFKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFACYNLPKAAKDEWVVCKVFHKSNTDVNKRVLPINPGIGLLRMNSVGEDLFDFSSLPPLVDPLFDQPSHKKHIDNDFKGTSNSTNTYTPSSASSSAAAEPPYYLPNFINNNHHMQMKMMMMMKPEEHRICETPLTNVNYASTCQGNLNSNNNPMGIGTSNHNPLQNTTSPFNMFQDYYMHQGNNSFQQCKREQFSNTVVSASQDTCLSNDRNTDTSSVVSKQDNMGRNKALYEDLDQAPSSVATLSDLDCLWDDY 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5782g00001 401 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Vium5782g00001 401 SUPERFAMILY NAC domain 15 168 IPR036093 GO:0003677|GO:0006355
Vium5782g00001 401 MobiDBLite consensus disorder prediction 224 243 - -
Vium5782g00001 401 Gene3D NAC domain 26 173 IPR036093 GO:0003677|GO:0006355
Vium5782g00001 401 MobiDBLite consensus disorder prediction 217 243 - -
Vium5782g00001 401 FunFam NAC domain-containing protein 100-like 26 172 - -
Vium5782g00001 401 ProSiteProfiles NAC domain profile. 17 168 IPR003441 GO:0003677|GO:0006355
Vium5782g00001 401 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5782g00001 Vium-Chr5782 50103 52359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5782g00001 1 216 NAC Transcription Factor Family AT5G18270 70.852 6.13e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium5782g00001 NAM 5.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5782g00001 - - gmx:100813376 573.548