LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium5781g00002	ATGCTCTCACGGCTCGCCGCATTGCCCAGAAGAGGCTTCCTTCTGGATACTAGCAGCTTAAACAAGGGTGTGAATGAAAGGCAGAGAATTTCAACCGAATCATCAAGAGCATCATTCTCTTCTTGTTCATCATCAGTGTCCTCTTTGGACTGCAAGGCTGAAGGAGAGGCTCCATTTGACCGGATTATTTTTCCTGAAACTCCTTCAAGGGATGCAGCCATGAACCAATCAACCATCTCTTCCCATTTTGGATGTAACTCCCTTGACCTGAGGGATGTGGTGAAAGATTCTATGTATAGGGAAGCCCGAGGGCTTTCAGTGAAGACTACAGGCAAAGAAGAATCTGCCATTAACGCCATGAAGCACAGGGATTCACCTCGTCCTATGCAGTTGCCCAAATCTGTTGATGGATCTTATAGAGGTGGAATAGATGGAAAACAAAGTATTCCTATTGATCTAAAGGAGTCTATCCGAGTCCTTGCTAAACTTAGAGAAGCACCTTGGTATTATGCAGAAACTAAAGAACTTCCAAGATCATCACATGATGTAAAAGATGGACCCTGGCATTCGAACGCAAAGGATGCTTCTTGGTTTGGTAATGAAGGAAAAGAAATAAATCGTTTGTCCTTTGAATCACGAGAGACCATCAAATCCACACCAAAACTAAAAGAGCTTCCTAGACTTTCACTGGATAGTAAGGAAGGTTCATTACGCCCTTACAGTTCTGATTCAGCTACTCACCCATCAAGAAACATTTACAGTGGCACACCCACATCAAATGACAAATTCTCTACCCTACAACAGCCTTCAACAATCCCCCGTCGTCCACCTGGTGTTGTGGCAAAACTAATGGGCTTGGAAGCATTACCAGATTCCTCTTTGGCTGGTGACACTCAACCATGTTCAACTGAAACATACTCAGCACAAGATAATAGTCAGTTTCCAAGATCATCAAAACAAGGACTAACCAGGCCACTCCGAGTTTCTCATTCTCCAAAAGTTTCTTTGAAAGACCCAATTTCCCCTCGTCGAAAAAATCCTGATCTAGTTATGAAACCCATCTCAAGTTCAAGGTTTCCCATTGAACCAGCACCATGGAAGCAGCAAGATGGAAATCGAAGCTCCCAGAAACTGAATTTAAGGGGTGTAAAAGCTCCAGCGAGAGCACCAGATAGCTTTCCTTCAGTTTATAGTGAGATAGAGAAGAGGTTGAAGGATCTTGAATTCAAACAATCTGGAAGGGATCTCAGAGCATTAAAACAGATACTTGAAGCAATGCAAGAAAAGGGACTATTAGAGAGCAGAAAAGAAGAACAAGCTCCAAATGTTATTGGAAGTCAAAATGACTATGACCAAAGAGCTACCAGCCAAGATCAGAATACCAGGTCATTAAGGCAACAAAACTCTCAGAGAAACAATTTTCTACCATCCACAATCAAGGGAACTGAATCAGCAAGGGCTTTTGAATCCCCAATAGTGATAATGAAGCCAGCAAAGCTTGTTGAGAAAACTGCAATTCCTGCTTCTTCAGTCATTCCTATTGGTGGTCTTTCTGTTTCCCAGAAACACCAGAATGCTGGTGTATATTTAGATAATAGAACCAGCACATCTGCTACTCGAGTAGCAAAAGATCAGTCTCCCAGGAACATTCATCGGGATGCTTCTGCCAGTTCCATTGATAAGAAAGCAAATGGTAGTAAGACTACTAGATCTGCACAATCTCAATCTAGGTCTCAGCAACATCTAAAAGAAAATAGCCAAAGTTCTGTGAAGCACTCAGGAACCGTGAGCCCTAGATTGCAACAGAAGAAGTTGGAGTTAGAGAAGCGATCTCGTCCACCTGCTCCACCATCAGATTCAACCAAACTCAGAAGGCAATCTGGTAAGAAGGCAACAGAGTCAGGTTCACCAGGTGGGAAACAAAGACCCAAAACTCTGAACTCGCGGCATAATGATGAGCAACTGAGTGAGATAAGCAACGAATCAAGAAGTTTAAGTTGCCTGGGGGATGAAATTTCTTTGCAATCAGACAGTTTAACTGTCAACTCAAAGATGGAAGTCGAAGTCACAAGTAGTTTAAAGTCTGTTGAAATTGATGACAGCCAAAGTCCTTCTTTGAAGGCTGTGAAGCAATTGATTTCAGAGACAGCGCCAAAAAAATCAACTCCAAGATTGGATGAGGATGAGTCGGTTGCAGAACTTGGAGGAGATGCTCCGGAACATCCAAGTCCTATCTCAGTTCTTGATGGATCGGTGTATAGAGATGATGTGCCATCCCCAGTAAAGCAGATATCTGAAGATTCAAAAGGTGATGATGCTCAAGAATCCAAAGAAAATGAGATTAAAGATCAATGGAACCCAGCAGAAAGCCTTTCATTTCACAGCATGGGATCAGGAGAGATCAATCGAAAAAAATTACAAAACATAGACCACCTTGTTCAGAAGCTTCGACGGCTGAACTCCAGTCACGATGAAGCTAGAATTGATTACATTGCTTCCCTATGTGAAAACTCAAATCCAGATCACAGATACATCTCTGAAATATTATTAGCTTCAGGCCTCTTACTCAGAGATTTGAGTTCCGAGTTGCTGACATTTCAACTTCACTCTTCGGGTAATCCCATTAACCCTGAGTTATTCCTTGTCTTGGAACAGACCAAGGCAAGTAGTTTGCTTTCAAAAGAAGAAAGCACCGCCGAAAAAGATTCTAACATGAAGCTGAACAAAGAGAAATTTCACAGGAAATTCATCTTTGATTCTGTGAATGAGATTCTTGGTGCCAAATTAGGCTCATCCCTAGAGCCATGGTTTCTGCCTAACAGTAACAGACTCACTAAGAAAACCTTGGGTGCTCAAAAGCTCCTCAAAGAACTATGCTTTGAGATCGAAAAAATTCAAGCCAAGAAGCCAGAATGCTGCTTAGAAGATGAAGATGATGATCTGAAAAGTATGCTGTGTCAAGATGTTATGCTTGGCTCAGAAAGTTGGACAGAATTTCATGGTTATTTACCTGGGATTGTGTTGGATGTTGAGAGACTTATATTCAAAGACTTGGTTGATGAAGTTGTGATTGGTGAATCATCTGGTTTGCGAGTCAAGCCATCAGTTAGGCGCAGGAAGCTATTTGGAAAGTAG	3135	0.4204	MLSRLAALPRRGFLLDTSSLNKGVNERQRISTESSRASFSSCSSSVSSLDCKAEGEAPFDRIIFPETPSRDAAMNQSTISSHFGCNSLDLRDVVKDSMYREARGLSVKTTGKEESAINAMKHRDSPRPMQLPKSVDGSYRGGIDGKQSIPIDLKESIRVLAKLREAPWYYAETKELPRSSHDVKDGPWHSNAKDASWFGNEGKEINRLSFESRETIKSTPKLKELPRLSLDSKEGSLRPYSSDSATHPSRNIYSGTPTSNDKFSTLQQPSTIPRRPPGVVAKLMGLEALPDSSLAGDTQPCSTETYSAQDNSQFPRSSKQGLTRPLRVSHSPKVSLKDPISPRRKNPDLVMKPISSSRFPIEPAPWKQQDGNRSSQKLNLRGVKAPARAPDSFPSVYSEIEKRLKDLEFKQSGRDLRALKQILEAMQEKGLLESRKEEQAPNVIGSQNDYDQRATSQDQNTRSLRQQNSQRNNFLPSTIKGTESARAFESPIVIMKPAKLVEKTAIPASSVIPIGGLSVSQKHQNAGVYLDNRTSTSATRVAKDQSPRNIHRDASASSIDKKANGSKTTRSAQSQSRSQQHLKENSQSSVKHSGTVSPRLQQKKLELEKRSRPPAPPSDSTKLRRQSGKKATESGSPGGKQRPKTLNSRHNDEQLSEISNESRSLSCLGDEISLQSDSLTVNSKMEVEVTSSLKSVEIDDSQSPSLKAVKQLISETAPKKSTPRLDEDESVAELGGDAPEHPSPISVLDGSVYRDDVPSPVKQISEDSKGDDAQESKENEIKDQWNPAESLSFHSMGSGEINRKKLQNIDHLVQKLRRLNSSHDEARIDYIASLCENSNPDHRYISEILLASGLLLRDLSSELLTFQLHSSGNPINPELFLVLEQTKASSLLSKEESTAEKDSNMKLNKEKFHRKFIFDSVNEILGAKLGSSLEPWFLPNSNRLTKKTLGAQKLLKELCFEIEKIQAKKPECCLEDEDDDLKSMLCQDVMLGSESWTEFHGYLPGIVLDVERLIFKDLVDEVVIGESSGLRVKPSVRRRKLFGK	1044

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium5781g00002	1044	PANTHER	LONGIFOLIA PROTEIN	18	1042	IPR033334	GO:0051513
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	440	479	-	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	528	544	-	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	559	600	-	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	714	782	-	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	235	272	-	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	295	325	-	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	720	735	-	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	291	390	-	-
	Vium5781g00002	1044	Pfam	DUF761-associated sequence motif	275	293	IPR032795	-
	Vium5781g00002	1044	Pfam	Domain of unknown function (DUF4378)	841	1021	IPR025486	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	760	782	-	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	528	666	-	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	630	644	-	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	120	142	-	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	432	479	-	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	175	189	-	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	175	196	-	-
	Vium5781g00002	1044	MobiDBLite	consensus disorder prediction	225	277	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium5781g00002	Vium-Chr5781	7378	13180	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium5781g00002	74	1043	TRM (TON1 Recruiting Motif) Superfamily	AT1G74160	46.922	0.0	687

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium5781g00002	-		-	gmx:100787391	1705.26