Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5781g00001 ATGGCAGCAAAACTCCTGCAATCTTTAGCAGATGAAAACCCAGATCTGCAGAAGCAGATAGGATGCATGACTGGGATTTTTCAGCTTTTTGATCGTCACCATGCTCTCACGGCTCGCCGCATTGCCCAGAAGAGGCTTCCTTCTGGTAATTCGCACTTCAGTTATGGAAGCTTGGAAAGAGATTCTAATAATATACACCATCGCCAAACAACAACAGATACTAGCAGCTTAAACAAGGGTGTGAATGAAAGGCAGAGAATTTCAACCGAATCATCAAGAGCATCATTCTCTTCTTGTTCATCATCAGTGTCCTCTTTGGACTGCAAGGCTGAAGGAGAGGCTCCATTTGACCGGATTATTTTTCCTGAAACTCCTTCAAGGGATGCAGCCATGAACCAATCAACCATCTCTTCCCATTTTGGATGTAACTCCCTTGACCTGAGGGATGTGGTGAAAGATTCTATGTATAGGGAAGCCCGAGGGCTTTCAGTGAAGACTACAGGCAAAGAAGAATCTGCCATTAACGCCATGAAGCACAGGGATTCACCTCGTCCTATGCAGTTGCCCAAATCTGTTGATGGATCTTATAGAGGTGGAATAGATGGAAAACAAAGTATTCCTATTGATCTAAAGGAGTCTATCCGAGTCCTTGCTAAACTTAGAGAAGCACCTTGGTATTATGCAGAAACTAAAGAACTTCCAAGATCATCACATGATGTAAAAGATGGACCCTGGCATTCGAACGCAAAGGATGCTTCTTGGTTTGGTAATGAAGGAAAAGAAATAAATCGTTTGTCCTTTGAATCACGAGAGACCATCAAATCCACACCAAAACTAAAAGAGCTTCCTAGACTTTCACTGGATAGTAAGGAAGGTTCATTACGCCCTTACAGTTCTGATTCAGCTACTCACCCATCAAGAAACATTTACAGTGGCACACCCACATCAAATGACAAATTCTCTACCCTACAACAGCCTTCAACAATCCCCCGTCGTCCACCTGGTGTTGTGGCAAAACTAATGGGCTTGGAAGCATTACCAGATTCCTCTTTGGCTGGTGACACTCAACCATGTTCAACTGAAACATACTCAGCACAAGATAATAGTCAGTTTCCAAGATCATCAAAACAAGGACTAACCAGGCCACTCCGAGTTTCTCATTCTCCAAAAGTTTCTTTGAAAGACCCAATTTCCCCTCGTCGAAAAAATCCTGATCTAGTTATGAAACCCATCTCAAGTTCAAGGTTTCCCATTGAACCAGCACCATGGAAGCAGCAAGATGGAAATCGAAGCTCCCAGAAACTGAATTTAAGGGGTGTAAAAGCTCCAGCGAGAGCACCAGATAGCTTTCCTTCAGTTTATAGTGAGATAGAGAAGAGGTTGAAGGATCTTGAATTCAAACAATCTGGAAGGGATCTCAGAGCATTAAAACAGATACTTGAAGCAATGCAAGAAAAGGGACTATTAGAGAGCAGAAAAGAAGAACAAGCTCCAAATGTTATTGGAAGTCAAAATGACTATGACCAAAGAGCTACCAGCCAAGATCAGAATACCAGGTCATTAAGGCAACAAAACTCTCAGAGAAACAATTTTCTACCATCCACAATCAAGGGAACTGAATCAGCAAGGGCTTTTGAATCCCCAATAGTGATAATGAAGCCAGCAAAGCTTGTTGAGAAAACTGCAATTCCTGCTTCTTCAGTCATTCCTATTGGTGGTCTTTCTGTTTCCCAGAAACACCAGAATGCTGGTGTATATTTAGATAATAGAACCAGCACATCTGCTACTCGAGTAGCAAAAGATCAGTCTCCCAGGAACATTCATCGGGATGCTTCTGCCAGTTCCATTGATAAGAAAGCAAATGGTAGTAAGACTACTAGATCTGCACAATCTCAATCTAGGTCTCAGCAACATCTAAAAGAAAATAGCCAAAGTTCTGTGAAGCACTCAGGAACCGTGAGCCCTAGATTGCAACAGAAGAAGTTGGAGTTAGAGAAGCGATCTCGTCCACCTGCTCCACCATCAGATTCAACCAAACTCAGAAGGCAATCTGGTAAGAAGGCAACAGAGTCAGGTTCACCAGGTGGGAAACAAAGACCCAAAACTCTGAACTCGCGGCATAATGATGAGCAACTGAGTGAGATAAGCAACGAATCAAGAAGTTTAAGTTGCCTGGGGGATGAAATTTCTTTGCAATCAGACAGTTTAACTGTCAACTCAAAGATGGAAGTCGAAGTCACAAGTAGTTTAAAGTCTGTTGAAATTGATGACAGCCAAAGTCCTTCTTTGAAGGCTGTGAAGCAATTGATTTCAGAGACAGCGCCAAAAAAATCAACTCCAAGATTGGATGAGGATGAGTCGGTTGCAGAACTTGGAGGAGATGCTCCGGAACATCCAAGTCCTATCTCAGTTCTTGATGGATCGGTGTATAGAGATGATGTGCCATCCCCAGTAAAGCAGATATCTGAAGATTCAAAAGGTGATGATGCTCAAGAATCCAAAGAAAATGAGATTAAAGATCAATGGAACCCAGCAGAAAGCCTTTCATTTCACAGCATGGGATCAGGAGAGATCAATCGAAAAAAATTACAAAACATAGACCACCTTGTTCAGAAGCTTCGACGGCTGAACTCCAGTCACGATGAAGCTAGAATTGATTACATTGCTTCCCTATGTGAAAACTCAAATCCAGATCACAGATACATCTCTGAAATATTATTAGCTTCAGGCCTCTTACTCAGAGATTTGAGTTCCGAGTTGCTGACATTTCAACTTCACTCTTCGGGTAATCCCATTAACCCTGAGTTATTCCTTGTCTTGGAACAGACCAAGGCAAGTAGTTTGCTTTCAAAAGAAGAAAGCACCGCCGAAAAAGATTCTAACATGAAGCTGAACAAAGAGAAATTTCACAGGAAATTCATCTTTGATTCTGTGAATGAGATTCTTGGTGCCAAATTAGGCTCATCCCTAGAGCCATGGTTTCTGCCTAACAGTAACAGACTCACTAAGAAAACCTTGGGTGCTCAAAAGCTCCTCAAAGAACTATGCTTTGAGATCGAAAAAATTCAAGCCAAGAAGCCAGAATGCTGCTTAGAAGATGAAGATGATGATCTGAAAAGTATGCTGTGTCAAGATGTTATGCTTGGCTCAGAAAGTTGGACAGAATTTCATGGTTATTTACCTGGGATTGTGTTGGATGTTGAGAGACTTATATTCAAAGACTTGGTTGATGAAGTTGTGATTGGTGAATCATCTGGTTTGCGAGTCAAGCCATCAGTTAGGCGCAGGAAGCTATTTGGAAAGTAG 3306 0.4198 MAAKLLQSLADENPDLQKQIGCMTGIFQLFDRHHALTARRIAQKRLPSGNSHFSYGSLERDSNNIHHRQTTTDTSSLNKGVNERQRISTESSRASFSSCSSSVSSLDCKAEGEAPFDRIIFPETPSRDAAMNQSTISSHFGCNSLDLRDVVKDSMYREARGLSVKTTGKEESAINAMKHRDSPRPMQLPKSVDGSYRGGIDGKQSIPIDLKESIRVLAKLREAPWYYAETKELPRSSHDVKDGPWHSNAKDASWFGNEGKEINRLSFESRETIKSTPKLKELPRLSLDSKEGSLRPYSSDSATHPSRNIYSGTPTSNDKFSTLQQPSTIPRRPPGVVAKLMGLEALPDSSLAGDTQPCSTETYSAQDNSQFPRSSKQGLTRPLRVSHSPKVSLKDPISPRRKNPDLVMKPISSSRFPIEPAPWKQQDGNRSSQKLNLRGVKAPARAPDSFPSVYSEIEKRLKDLEFKQSGRDLRALKQILEAMQEKGLLESRKEEQAPNVIGSQNDYDQRATSQDQNTRSLRQQNSQRNNFLPSTIKGTESARAFESPIVIMKPAKLVEKTAIPASSVIPIGGLSVSQKHQNAGVYLDNRTSTSATRVAKDQSPRNIHRDASASSIDKKANGSKTTRSAQSQSRSQQHLKENSQSSVKHSGTVSPRLQQKKLELEKRSRPPAPPSDSTKLRRQSGKKATESGSPGGKQRPKTLNSRHNDEQLSEISNESRSLSCLGDEISLQSDSLTVNSKMEVEVTSSLKSVEIDDSQSPSLKAVKQLISETAPKKSTPRLDEDESVAELGGDAPEHPSPISVLDGSVYRDDVPSPVKQISEDSKGDDAQESKENEIKDQWNPAESLSFHSMGSGEINRKKLQNIDHLVQKLRRLNSSHDEARIDYIASLCENSNPDHRYISEILLASGLLLRDLSSELLTFQLHSSGNPINPELFLVLEQTKASSLLSKEESTAEKDSNMKLNKEKFHRKFIFDSVNEILGAKLGSSLEPWFLPNSNRLTKKTLGAQKLLKELCFEIEKIQAKKPECCLEDEDDDLKSMLCQDVMLGSESWTEFHGYLPGIVLDVERLIFKDLVDEVVIGESSGLRVKPSVRRRKLFGK 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 292 329 - -
Vium5781g00001 1101 PANTHER LONGIFOLIA PROTEIN 1 1099 IPR033334 GO:0051513
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 497 536 - -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 616 657 - -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 585 723 - -
Vium5781g00001 1101 Pfam DUF761-associated sequence motif 332 350 IPR032795 -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 489 536 - -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 68 93 - -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 687 701 - -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 777 792 - -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 232 253 - -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 177 199 - -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 232 246 - -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 282 334 - -
Vium5781g00001 1101 Pfam Domain of unknown function (DUF4378) 898 1078 IPR025486 -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 771 839 - -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 348 447 - -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 352 382 - -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 585 601 - -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 49 93 - -
Vium5781g00001 1101 MobiDBLite consensus disorder prediction 817 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5781g00001 Vium-Chr5781 7378 13180 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5781g00001 131 1100 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 46.922 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5781g00001 - - gmx:100787391 1814.28