LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium577g00006	ATGGAAGATGATAATCACAACAAGTTCACAGTCACGACCAGACTAGTTATTGGTCACGGGTTTACTGCGGAGAACCGGCTTAATCGGTCACCCACTGCGTTAAAAAAACACGGCTTTCCCTTCCAGCCTCTTGTCGACATCGACCAGGGGTCCTCTCAAAAAATGCTCCCTCTGCGTTCGCAATCACAGGTTGGGGGACTACAAACATCACTGTCTCTTGTTTCTTCAGATCCTGTTCTGTCTCCTGATGAACCAAGATCAAACTCTGACAATCTCCGTGAATCTCCGGCTGAAAGTGCAAGTTCTCAAGAAACATGGCCTACAGCTGATGCAGCTACAACAAAGAAGACGGAGAATGGAAAAGCAGAGATTAATTGCCTTGAGCAGAATGTGATTCACCGTGTTTCTAGTGCAGACAAAGTTACTCTTCAGGATATTGCCAGAGAAAGTGTCGGTACAATATGTGAAAAAATGCATCGTCTACCTGAGGAGTATCTAGAAGAGTTGAAAAATGGACTTCGAGTTATCCTTGATGGAGGGAATGGTTCACAGCATAGAGAAGAATTTTTCATTTTGCAGAAGTTTGTTCAGGGCAGAACTGATTTGACAGCCAAGACACTGGTCAGAGCACATCGAGTGCAACTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAGTCTTTCACAGAATTCCCTGATTGAGATCTTTGGCTATAAGAGATGCAGAAACATAGCGTGCCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGAAATATGCAACGGCACTAATGGTTTCTGCAATCTTTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAGGTGAATACTTGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTCAGCAACTTATTTGCATTGGCCCTTCTTCAAAGAGCGGGGTGGGACCCACTGAAATGGTTTTCCGGTGTCAAGCTTGCAATAGGACTTCAGAACTGTTGGGTTGGGTTAAAGATGTTTTCCAGCACTGTGCACCTTCATGGGATGGAGAAGCCTTAATGAGGGAACTTGATTATGTTAGCAGGATCTTTCACGGGAGTAAAGACCCTCGAGGGAGGAAGTTGTTTTGGAAGTGTGATGATCTGAAGGAAAAATTGAAAACTAAAAAAGTAGATTCAAAGGCTGCTTGCAGGGCAATTTTGATGTTTTTCCAAGAGCTTGAGGTAGACTCTCCAAAAGGCTTGGAAAATGGAGAAAGTGGAAGGTTGATTGCTCCACAAGATGCATGTAATAGAATTGCTGAAGTAGTGCAGGAGGCTATAAGAAAGATGGAAATAGTAGCTGATGAGAAGATGAGGATGTTCAAGAAGGCTCGCATGGCCCTCGAAGCTTGCGATCGTGAATTAGCTGACAAATCCAGGGAAGTGGCAGAGCTCAAGATGGAGAGGCAGAAAAGGAAGCTGCAGATAGAAGAGTTGGAGAAAATTGTGAGGCTCAAAAATGCGGAGGCTGATATGTTCCAATTGAAGGCTAATGAGGCTAAACGAGAGGCTGAGAGGCTCCAGAGGATTTCTCTTGCCAAGCAAGATAAATCAGAGGAAGAATTTACTAGCAACTACCTGAAACAACGATTAAACGAAGCCGAGGCTGAGAAACAGTATCTTTACGAGAAGATCAAATTGCAGGAGAGTTCTCGTGCTTCACAGAGCAGTAGTGGTGGTGACCCCTCTCAGATGCTGATGTATTCCAAAATCCATGATCTGTTGTACAATGCTCCTCCCAAACCAGACACTCAGGGCCACCCTTTTCGGACAAATCCCTGA	1857	0.4432	MEDDNHNKFTVTTRLVIGHGFTAENRLNRSPTALKKHGFPFQPLVDIDQGSSQKMLPLRSQSQVGGLQTSLSLVSSDPVLSPDEPRSNSDNLRESPAESASSQETWPTADAATTKKTENGKAEINCLEQNVIHRVSSADKVTLQDIARESVGTICEKMHRLPEEYLEELKNGLRVILDGGNGSQHREEFFILQKFVQGRTDLTAKTLVRAHRVQLEILVAINTGIQGFLHPSISLSQNSLIEIFGYKRCRNIACQNQLPADDCTCEICNGTNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRQQLICIGPSSKSGVGPTEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDYVSRIFHGSKDPRGRKLFWKCDDLKEKLKTKKVDSKAACRAILMFFQELEVDSPKGLENGESGRLIAPQDACNRIAEVVQEAIRKMEIVADEKMRMFKKARMALEACDRELADKSREVAELKMERQKRKLQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRISLAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYEKIKLQESSRASQSSSGGDPSQMLMYSKIHDLLYNAPPKPDTQGHPFRTNP	618

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium577g00006	618	MobiDBLite	consensus disorder prediction	72	117	-	-
	Vium577g00006	618	Pfam	PHD - plant homeodomain finger protein	249	372	IPR032881	-
	Vium577g00006	618	MobiDBLite	consensus disorder prediction	573	618	-	-
	Vium577g00006	618	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	66	602	IPR004082	-
	Vium577g00006	618	Pfam	Coiled-coil region of Oberon	467	600	IPR032535	-
	Vium577g00006	618	PIRSF	UCP025218	49	606	-	-
	Vium577g00006	618	Coils	Coil	510	542	-	-
	Vium577g00006	618	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	502	522	IPR004082	-
	Vium577g00006	618	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	359	378	IPR004082	-
	Vium577g00006	618	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	199	214	IPR004082	-
	Vium577g00006	618	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	214	229	IPR004082	-
	Vium577g00006	618	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	541	563	IPR004082	-
	Vium577g00006	618	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	240	261	IPR004082	-
	Vium577g00006	618	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	157	179	IPR004082	-
	Vium577g00006	618	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	286	306	IPR004082	-
	Vium577g00006	618	Coils	Coil	473	507	-	-
	Vium577g00006	618	MobiDBLite	consensus disorder prediction	573	589	-	-
	Vium577g00006	618	CDD	PHD_OBE1_like	279	338	IPR047578	-
	Vium577g00006	618	SMART	PHD_3	279	339	IPR001965	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium577g00006	Vium-Chr577	26140	29363	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium577g00006	249	351	PHD Gene Family	AT5G57380	33.654	5.01e-10	60.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium577g00006	-		-	vum:124846085	1236.86