LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium577g00004	ATGTCCTCCCACCGCGCGTTCCAGCTTAAACTTAATCCGTTAACAGGTAACTCTGAATGGATCGTCATTGAAGACAATGACGAGAGCTTCGCTCAGAATTTCCACAAGCCTTTCCTTGCCACGACGTCGTATTTGGACATGCTTAATGACTCCACCAGAAACGCGGCATTTCGCCACGCCATTGAGAAAACCATCAGCAAACCTTGCCATGTCCTCGATATCGGTGCTGGAACTGGGTTGCTTTCGATGATGGCTGCACGTGCCATGGGTGACGAAGGGAAGGTCACAGCTTGTGAATCTTACCTTCCCATGGTGAAGCTGATGAAGAAGGTGTTGCGCCTTAATGGCATGGAGGGAAGAGTCAAAATCATCAACAAGCGCTCTGAGGAACTCCAAGTTGGTCTTGATATGCCTTCGCGAGCACATGTTCTTGTAAGCGAGATACTTGATTCAGAGCTACTGGGTGAGGGGCTTATACCGACCCTACAACATGCACATGACAATTTGTTGGTGGAAAATGCCATGACTGTGCCATATCGAGCAACTATATATGGACAGCTGGTTGAAAGCACATTCTTATGGAAGTTGCATGATTTTCATAACAACGAGGCTACTGTATCTGATAGCATTCGGCTTACTCCTCCAGGACTTGATTGTGTGCTAGGTATCAAACGTCAGCAATATGCTATGCATGTCAATCCTTTACAGGAAGAAATAACATTGCTTTCAGAACCCTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTATGGCGAAACTGAGTTGTGTGTAAAGGCAACGAATGATGGGAGAGTTCATGTTGTGGTCTCTTGGTGGGTACTTCAACTTGATCAGGAAGGGACTATCTATTATTCCACTGCTCCAAGGTGGATAAGCTCACCGACAATTACAAGTCCTATTGGTTGGTGTGACCACTGGAAACAGTGTGTTTGGTTCGTTCCAGGCAGTGGTATTTCCATACTCCAAGGGGAAGAAATTCGTTTACTTGCTACTCATACTGAAACTAGTTTCTCATATAATTTTGATACCCTAGTACCAACTACTGAGATTTTGAACCATAGGTGCATGACAGGAGATTTTCAGCTTGTACTACCACCAGAAAGAGCTGCAATTTATGCAGATAAAGAATGGAGGCTTTCAATGTTGAAAGCAGTACAAAGCATGGGAAAAGATCGCCTGTTATGCTTGGTTGTAGATGATAGTGTCTTTTTACCACTTCTTGTAGCAAAGCTTTCCGAAGCAAGTGTAATGTCATTACTTCCTGGATTGAGGGAAAGGGGCCTCCAATACCTGCAAGCAGTTGCCCATGCAAATGGTTTGTCACATAGTTGCATTGAAGTTCTTGAAAAAAACGTGCAACAGTTAAACATGCATGATATACATCAGAAAAAGGTTGATCTGTTAATAGCTGAACCTTTCTATGTAGGACACGATGGTATGCTGCCATGGCAGAACCTACGATTTTGGAGGGATCGTACTACACTTAATGATATACTCTCAGAAGATGCTCTGACAATTCCTAGTAAAGGAATATTGAGAGCATGCGCTATGTCTCTTCCTGATCTTTGGAAAAGTCGTTGTTGCCTGAGTAGTATTGAAGGTTTTGACCATTCAGTGGTAAATGCTACATTGGGGGCCTGCGGTCATCTACCAGAACTAGAAGACGGTCCCTGTCTCCCTTTTTTCGTCTGGCAGTGTGGAGAATTTGATGTGCTTAGTGAGACATTTGACGTGATGGAGTTTGAGTTTTCAAAACAAATATGCGAATGTCAAGGAAAATCCCAGGTTAAGTTCACCAAGAGGGGGGTATGTCATGGATTTGTATTATGGATTGACTGGGTCATGGATTTACAAAATTCTATTGTGATTTCAACTGGTCCAGATTGCAGATAG	1923	0.4321	MSSHRAFQLKLNPLTGNSEWIVIEDNDESFAQNFHKPFLATTSYLDMLNDSTRNAAFRHAIEKTISKPCHVLDIGAGTGLLSMMAARAMGDEGKVTACESYLPMVKLMKKVLRLNGMEGRVKIINKRSEELQVGLDMPSRAHVLVSEILDSELLGEGLIPTLQHAHDNLLVENAMTVPYRATIYGQLVESTFLWKLHDFHNNEATVSDSIRLTPPGLDCVLGIKRQQYAMHVNPLQEEITLLSEPFKIFEFDFWKRPESYGETELCVKATNDGRVHVVVSWWVLQLDQEGTIYYSTAPRWISSPTITSPIGWCDHWKQCVWFVPGSGISILQGEEIRLLATHTETSFSYNFDTLVPTTEILNHRCMTGDFQLVLPPERAAIYADKEWRLSMLKAVQSMGKDRLLCLVVDDSVFLPLLVAKLSEASVMSLLPGLRERGLQYLQAVAHANGLSHSCIEVLEKNVQQLNMHDIHQKKVDLLIAEPFYVGHDGMLPWQNLRFWRDRTTLNDILSEDALTIPSKGILRACAMSLPDLWKSRCCLSSIEGFDHSVVNATLGACGHLPELEDGPCLPFFVWQCGEFDVLSETFDVMEFEFSKQICECQGKSQVKFTKRGVCHGFVLWIDWVMDLQNSIVISTGPDCR	640

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium577g00004	640	Gene3D	-	180	365	-	-
	Vium577g00004	640	Gene3D	Vaccinia Virus protein VP39	371	517	IPR029063	-
	Vium577g00004	640	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	438	637	IPR029063	-
	Vium577g00004	640	PANTHER	PROTEIN ARGININE N-METHYLTRANSFERASE	439	638	IPR025799	GO:0016274\|GO:0018216
	Vium577g00004	640	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	44	366	IPR029063	-
	Vium577g00004	640	FunFam	Protein arginine N-methyltransferase	37	179	-	-
	Vium577g00004	640	Pfam	Lysine methyltransferase	22	125	IPR019410	-
	Vium577g00004	640	Gene3D	-	521	640	-	-
	Vium577g00004	640	FunFam	Protein arginine N-methyltransferase 1.6	180	365	-	-
	Vium577g00004	640	FunFam	Protein arginine N-methyltransferase 7	370	517	-	-
	Vium577g00004	640	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	23	352	IPR025799	GO:0016274\|GO:0018216
	Vium577g00004	640	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	358	640	IPR025799	GO:0016274\|GO:0018216
	Vium577g00004	640	Gene3D	Vaccinia Virus protein VP39	38	179	IPR029063	-
	Vium577g00004	640	PIRSF	Arg_N-mtase	4	639	IPR014644	GO:0006479\|GO:0008168
	Vium577g00004	640	CDD	AdoMet_MTases	71	132	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium577g00004	Vium-Chr577	8774	15620	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium577g00004	22	184	C2H2 Transcription Factor Family	AT3G12270	27.907	1.58e-11	65.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium577g00004	K11438		-	gmx:100785846	1158.67