Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium577g00002 ATGTCCTCCCACCGCGCGTTCCAGCTTAAACTTAATCCGTTAACAGGTAACTCTGAATGGATCGTCATTGAAGACAATGACGAGAGCTTCGCTCAGAATTTCCACAAGCCTTTCCTTGCCACGACGTCGTATTTGGACATGCTTAATGACTCCACCAGAAACGCGGCATTTCGCCACGCCATTGAGAAAACCATCAGCAAACCTTGCCATGTCCTCGATATCGGTGCTGGAACTGGGTTGCTTTCGATGATGGCTGCACGTGCCATGGGTGACGAAGGGAAGGTCACAGCTTGTGAATCTTACCTTCCCATGGTGAAGCTGATGAAGAAGGTGTTGCGCCTTAATGGCATGGAGGGAAGAGTCAAAATCATCAACAAGCGCTCTGAGGAACTCCAAGTTGGTCTTGATATGCCTTCGCGAGCACATGTTCTTCTGGTTGAAAGCACATTCTTATGGAAGTTGCATGATTTTCATAACAACGAGGCTACTGTATCTGATAGCATTCGGCTTACTCCTCCAGGACTTGATTGTGTGCTAGGTATCAAACGTCAGCAATATGCTATGCATGTCAATCCTTTACAGGAAGAAATAACATTGCTTTCAGAACCCTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTATGGCGAAACTGAGTTGTGTGTAAAGGCAACGAATGATGGGAGAGTTCATGTTGTGGTCTCTTGGTGGGTACTTCAACTTGATCAGGAAGGGACTATCTATTATTCCACTGCTCCAAGGTGGATAAGCTCACCGACAATTACAAGTCCTATTGGTTGGTGTGACCACTGGAAACAGTGTGTTTGGTTCGTTCCAGGCAGTGGTATTTCCATACTCCAAGGGGAAGAAATTCGTTTACTTGCTACTCATACTGAAACTAGTTTCTCATATAATTTTGATACCCTAGTACCAACTACTGAGATTTTGAACCATAGGTGCATGACAGGAGATTTTCAGCTTGTACTACCACCAGAAAGAGCTGCAATTTATGCAGATAAAGAATGGAGGCTTTCAATGTTGAAAGCAGTACAAAGCATGGGAAAAGATCGCCTGTTATGCTTGGTTGTAGATGATAGTGTCTTTTTACCACTTCTTGTAGCAAAGCTTTCCGAAGCAAGTGTAATGTCATTACTTCCTGGATTGAGGGAAAGGGGCCTCCAATACCTGCAAGCAGTTGCCCATGCAAATGGTTTGTCACATAGTTGCATTGAAGTTCTTGAAAAAAACGTGCAACAGTTAAACATGCATGATATACATCAGAAAAAGGTTGATCTGTTAATAGCTGAACCTTTCTATGTAGGACACGATGGTATGCTGCCATGGCAGAACCTACGATTTTGGAGGGATCGTACTACACTTAATGATATACTCTCAGAAGATGCTCTGACAATTCCTAGTAAAGGAATATTGAGAGCATGCGCTATGTCTCTTCCTGATCTTTGGAAAAGTCGTTGTTGCCTGAGTAGTATTGAAGGTTTTGACCATTCAGTGGTAAATGCTACATTGGGGGCCTGCGGTCATCTACCAGAACTAGAAGACGGTCCCTGTCTCCCTTTTTTCGTCTGGCAGTGTGGAGAATTTGATGTGCTTAGTGAGACATTTGACGTGATGGAGTTTGAGTTTTCAAAACAAATATGCGAATGTCAAGGAAAATCCCAGGTTAAGTTCACCAAGAGGGGGGTATGTCATGGATTTGTATTATGGATTGACTGGGTCATGGATTTACAAAATTCTATTGTGATTTCAACTGGTCCAGATAGGAAGTACTGGAAGCAGGGAGTTAAGCTTCTTGGAACACCTAGAACAGTAGACCCTCAAAGCTTGACAAGTGTCCAACCTTGTTCTGCAGTTGTCGAAGCTTGTTTTAGCCCATTAAAGGGGGAACTCAAAATTATACTTGATTTTTTATGA 1941 0.4292 MSSHRAFQLKLNPLTGNSEWIVIEDNDESFAQNFHKPFLATTSYLDMLNDSTRNAAFRHAIEKTISKPCHVLDIGAGTGLLSMMAARAMGDEGKVTACESYLPMVKLMKKVLRLNGMEGRVKIINKRSEELQVGLDMPSRAHVLLVESTFLWKLHDFHNNEATVSDSIRLTPPGLDCVLGIKRQQYAMHVNPLQEEITLLSEPFKIFEFDFWKRPESYGETELCVKATNDGRVHVVVSWWVLQLDQEGTIYYSTAPRWISSPTITSPIGWCDHWKQCVWFVPGSGISILQGEEIRLLATHTETSFSYNFDTLVPTTEILNHRCMTGDFQLVLPPERAAIYADKEWRLSMLKAVQSMGKDRLLCLVVDDSVFLPLLVAKLSEASVMSLLPGLRERGLQYLQAVAHANGLSHSCIEVLEKNVQQLNMHDIHQKKVDLLIAEPFYVGHDGMLPWQNLRFWRDRTTLNDILSEDALTIPSKGILRACAMSLPDLWKSRCCLSSIEGFDHSVVNATLGACGHLPELEDGPCLPFFVWQCGEFDVLSETFDVMEFEFSKQICECQGKSQVKFTKRGVCHGFVLWIDWVMDLQNSIVISTGPDRKYWKQGVKLLGTPRTVDPQSLTSVQPCSAVVEACFSPLKGELKIILDFL 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium577g00002 646 FunFam Protein arginine N-methyltransferase 1.6 479 645 - -
Vium577g00002 646 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 44 324 IPR029063 -
Vium577g00002 646 CDD AdoMet_MTases 71 174 - -
Vium577g00002 646 Gene3D - 479 645 - -
Vium577g00002 646 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 397 615 IPR025799 GO:0016274|GO:0018216
Vium577g00002 646 Gene3D - 142 323 - -
Vium577g00002 646 FunFam Protein arginine N-methyltransferase 7 328 475 - -
Vium577g00002 646 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 316 646 IPR025799 GO:0016274|GO:0018216
Vium577g00002 646 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 396 619 IPR029063 -
Vium577g00002 646 Gene3D Vaccinia Virus protein VP39 21 141 IPR029063 -
Vium577g00002 646 Pfam Lysine methyltransferase 22 122 IPR019410 -
Vium577g00002 646 FunFam Protein arginine N-methyltransferase 1.6 140 323 - -
Vium577g00002 646 Gene3D Vaccinia Virus protein VP39 329 475 IPR029063 -
Vium577g00002 646 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 23 310 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium577g00002 Vium-Chr577 8616 15621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium577g00002 22 147 C2H2 Transcription Factor Family AT3G12270 27.407 6.13e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium577g00002 K11438 - gmx:100785846 1140.56