Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5768g00026 ATGAACACGTTTTCACATGTTCCTCCCGGATTTCGTTTCCATCCCACTGATGAAGAGCTTGTTCATCACTACCTTAAGAAAAAAGTAGCTTCTAAAAGGATTGACCCAGAAGTGATAAAAGACATTGATCTCTATAAAATCGAGCCATGGGATCTTCAAGAATTATGCAAAACTGGAAATGATGAACAAGATGAATGGTACTTCTTTAATCATAAGGACAAGAAGTATCCAACAGGAATTCGTATCAATAGAGCTACAAAAGTAGGATTCTGGAAAGCTACAGGGAGAGACAAGGCAATTTACTGTAAGCATTGTCTTACTGGAATGAGAAAGACTCTTGTGTTTTACAAAGGAAGAGCACCCAATGGACAAAAATCTGACTGGATCATGCATGAGTATCGGCTACAAACTATTGAAAATGGAACTCCTCAGGAAGAAGGGTGGGTTGTATGTAGAGTGTTCAAAAAACGAATGACAACAGTGAGGAAAATGGGTGATTACGTGTCGCCATGTTGGTATGATGACCAAGTCTCGTTCATGCAAGAACTGGAATCTCCAATTCCAATTTCTAACCCTAATGCACCAAATCGTCACCCCTACCCCAGCAAGGAGTTGGAATTGCAATTCAATATTCCCCATGACGCTTTCCTCCAACTTCCACAACTTCAAAGTCCCGTGATTCTTCAATCTACGGCTAGTTTGAGTTTTAGCCCAGTTGTCTCTTACGGCTATGGTAGCAAGAACAATGGAAACGCTTTGCAGTCATCATCTCTCACTCAAGAACATCGACAGTTTCATTATGCTAGTAATGATCAATCTATGGATTGGCGAGTACTTGACCAGTTTGTGGGTAATGAGCTGAGTCACGATGAACATTTTTCCAATGTGGTTCACCAGATGAAGTTGCCGGCAGACGGATCTACAAAACCAGAAACCGGTCAGGAAAGTGCTTCAACTTCCATCTCCGGTTCCCAGATTGACCTCTGGAAATGA 993 0.4159 MNTFSHVPPGFRFHPTDEELVHHYLKKKVASKRIDPEVIKDIDLYKIEPWDLQELCKTGNDEQDEWYFFNHKDKKYPTGIRINRATKVGFWKATGRDKAIYCKHCLTGMRKTLVFYKGRAPNGQKSDWIMHEYRLQTIENGTPQEEGWVVCRVFKKRMTTVRKMGDYVSPCWYDDQVSFMQELESPIPISNPNAPNRHPYPSKELELQFNIPHDAFLQLPQLQSPVILQSTASLSFSPVVSYGYGSKNNGNALQSSSLTQEHRQFHYASNDQSMDWRVLDQFVGNELSHDEHFSNVVHQMKLPADGSTKPETGQESASTSISGSQIDLWK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5768g00026 330 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 256 - -
Vium5768g00026 330 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Vium5768g00026 330 MobiDBLite consensus disorder prediction 309 330 - -
Vium5768g00026 330 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Vium5768g00026 330 FunFam Nac domain-containing protein 86 16 159 - -
Vium5768g00026 330 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Vium5768g00026 330 MobiDBLite consensus disorder prediction 303 330 - -
Vium5768g00026 330 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5768g00026 Vium-Chr5768 122091 123974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5768g00026 1 330 NAC Transcription Factor Family AT1G12260 53.977 4.13e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium5768g00026 NAM 1.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5768g00026 - - gmx:100779370 487.648