Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5768g00024 ATGGCCGACGACGCAAAAGCCAAGGGCAACGCCGCTTTCGCCTCCAAGGACTACGCCGCCGCTATTCGCCACTTCTCCGACGCCATCGCCTTGGCCCCTGACAACCACGTCCTCTATTCCAACCGATCCGCCGCCTACGCGTCCCTCAAAAACTACTCCGATGCCCTAATCGATGCCAAGAAGACCGTCGAACTCAAGCCTGACTGGTCCAAGGGCTACAGTCGTCTCGGCGCCGCGCATTTCGGCCTCTCCCAATATGAAGACGCACTTTCGGCTTACAAGAAGGGCCTCGAATTCGACCCCAACAACGAGCCCCTCAGGGCCGGTCTTGCCGATGCGCAGAAGGCTCTAGCTGAGGCCTCCAGACCCCGCTCCTCCGCTGCCAACCCCTTCGGCGATGCATTCTCAGGGCCCGAGATGTGGACCCGGCTCACCGCGGACCCCTCAACTAGGGCTTACCTCCAACAGCCGGATTTCGTGAAGATGATGCAGGATATCCAGAGAGATCCTAACAAACTAAACCTGCATTTGAATGACAAGAGAGTCATGCAAGCCATAGGGGTTTTGCTCAACGTCAAGATTCAAACCTCTCCCCCCGCCGACGCTGACATACCGGATTCGCCCTCTGCGTCCCCGTCCCCGTCCGAGAGGAAGAGAGCCGCGGAAGCTGAACCCGCCAAGCAGCCCGAGCCTGAACCCGAACCCGAGCCCATGGATTTGTCTGATGAGGACAAGAGCGCGAAGCAGAGGAAGGCTGAGGCTCTGAAAGAAAAGGAAGCGGGCAATGCAGCGTATAAGAAGAAGGATTTTGATACTGCAATTCAACATTACACCAATGCTTTGGAGTTGGATGATGAAGATATATCGTATCTCACCAACCGCGCTGCTGTGTACTTGGAAATGGGAAAGTATGAGGACTGTATAAAAGATTGTGACAAGGCTGTTGAAAGAGGAAGAGAGCTAAGATCAGATTTTAAAATGATAGCCAGAGCTTTGACAAGGAAAGGAACTGCCTTGGTGAAAATGGCGAAGTGCTCAAAGGATTACGACCCTGCCATTGAAACATTCCAGAAAGCACTAACTGAGCATCGCAACCCTGACACTTTGAAGAAACTTAATGAAGCTGAAAAGGCAAAAAAAGATCTGGAACAACTAGAATATTTTGATCCAAAGTTGGCTGATGAGGAGAGAGAAAAAGGAAATGAATTCTTTAAGCAGCAGAAGTATCCCGAGGCTGTGAAGCATTACTCAGAGTCTATACGAAGAAATCCAAAAGATCCTAGGGCCTATAGTAACAGAGCAGCATGCTATACTAAGTTGGCGGCATTGCCTGAAGGTTTAAAGGATGCAGAGAAGTGTATTGAACTTGATCCAACCTTCGTAAAGGGTTATACCAGGAAGGGTGCGGTGCAATATTTCATGAAGGAGTATGACAAAGCTTTGGAAACATATAGGGAGGGATTGAAATATGACGCTAACAACCAGGAGTTGCTTGAAGGAATTAGAACTTGTATACAACAAATTAATAAGGCTAGCCGTGGAGACTTAAGTCCCGAGGAATTGAAGGAGAGACAGGCAAAGGCAATGCAGGATCCAGAAATTCAGATCATTCTCCAAGACCCTGTTATGAGACAGGTGTTTGTTGATTTCCAGGAAAATCCCAAGGCTGCACAGGAACATACGAAGAATCCTATGGTGATGAACAAGATCCAGAAGCTGGTCAGCGCCGGAATTGTTCAGATGAGGTAA 1749 0.4957 MADDAKAKGNAAFASKDYAAAIRHFSDAIALAPDNHVLYSNRSAAYASLKNYSDALIDAKKTVELKPDWSKGYSRLGAAHFGLSQYEDALSAYKKGLEFDPNNEPLRAGLADAQKALAEASRPRSSAANPFGDAFSGPEMWTRLTADPSTRAYLQQPDFVKMMQDIQRDPNKLNLHLNDKRVMQAIGVLLNVKIQTSPPADADIPDSPSASPSPSERKRAAEAEPAKQPEPEPEPEPMDLSDEDKSAKQRKAEALKEKEAGNAAYKKKDFDTAIQHYTNALELDDEDISYLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYDPAIETFQKALTEHRNPDTLKKLNEAEKAKKDLEQLEYFDPKLADEEREKGNEFFKQQKYPEAVKHYSESIRRNPKDPRAYSNRAACYTKLAALPEGLKDAEKCIELDPTFVKGYTRKGAVQYFMKEYDKALETYREGLKYDANNQELLEGIRTCIQQINKASRGDLSPEELKERQAKAMQDPEIQIILQDPVMRQVFVDFQENPKAAQEHTKNPMVMNKIQKLVSAGIVQMR 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5768g00024 582 SMART tpr_5 393 426 IPR019734 GO:0005515
Vium5768g00024 582 SMART tpr_5 254 287 IPR019734 GO:0005515
Vium5768g00024 582 SMART tpr_5 70 103 IPR019734 GO:0005515
Vium5768g00024 582 SMART tpr_5 36 69 IPR019734 GO:0005515
Vium5768g00024 582 SMART tpr_5 288 321 IPR019734 GO:0005515
Vium5768g00024 582 SMART tpr_5 329 366 IPR019734 GO:0005515
Vium5768g00024 582 SMART tpr_5 427 460 IPR019734 GO:0005515
Vium5768g00024 582 SMART tpr_5 461 494 IPR019734 GO:0005515
Vium5768g00024 582 SMART tpr_5 2 35 IPR019734 GO:0005515
Vium5768g00024 582 MobiDBLite consensus disorder prediction 217 260 - -
Vium5768g00024 582 Pfam TPR repeat 261 302 - -
Vium5768g00024 582 Pfam TPR repeat 400 439 - -
Vium5768g00024 582 ProSiteProfiles TPR repeat profile. 254 287 IPR019734 GO:0005515
Vium5768g00024 582 Gene3D Tetratricopeptide repeat domain 251 385 IPR011990 GO:0005515
Vium5768g00024 582 SMART CBM 137 176 IPR006636 -
Vium5768g00024 582 SMART CBM 531 570 IPR006636 -
Vium5768g00024 582 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Vium5768g00024 582 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Vium5768g00024 582 FunFam Stress-induced phosphoprotein 1 1 116 - -
Vium5768g00024 582 Coils Coil 365 385 - -
Vium5768g00024 582 FunFam Putative stress-induced-phosphoprotein 1 127 195 - -
Vium5768g00024 582 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Vium5768g00024 582 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Vium5768g00024 582 SUPERFAMILY TPR-like 253 380 IPR011990 GO:0005515
Vium5768g00024 582 Gene3D Tetratricopeptide repeat domain 392 512 IPR011990 GO:0005515
Vium5768g00024 582 Pfam Tetratricopeptide repeat 462 494 IPR019734 GO:0005515
Vium5768g00024 582 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 514 582 - -
Vium5768g00024 582 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Vium5768g00024 582 Gene3D - 128 195 - -
Vium5768g00024 582 SUPERFAMILY TPR-like 392 505 IPR011990 GO:0005515
Vium5768g00024 582 ProSiteProfiles TPR repeat profile. 461 494 IPR019734 GO:0005515
Vium5768g00024 582 Gene3D - 513 582 - -
Vium5768g00024 582 MobiDBLite consensus disorder prediction 197 260 - -
Vium5768g00024 582 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Vium5768g00024 582 ProSiteProfiles TPR repeat profile. 393 426 IPR019734 GO:0005515
Vium5768g00024 582 PANTHER TPR REPEAT CONTAINING PROTEIN 2 554 - -
Vium5768g00024 582 FunFam hsp70-Hsp90 organizing protein 3-like 392 506 - -
Vium5768g00024 582 Pfam STI1 domain 138 191 IPR041243 -
Vium5768g00024 582 Pfam STI1 domain 523 574 IPR041243 -
Vium5768g00024 582 Pfam Tetratricopeptide repeat 7 59 - -
Vium5768g00024 582 FunFam Stress-induced phosphoprotein 1 251 385 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5768g00024 392 488 U-box Gene Family AT3G07370 27.835 1.53e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5768g00024 K09553 - gmx:100816776 982.63