Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5768g00023 ATGGCAACCACAGTGAGGCTTGTTTCACTGCTTCTCATGAACCTTGTAATTTACATGAGCAGCACCGCACAATGTTCCATAACCAAACACGCAGACCCTAACCCTGCAGAGTTCGTGAAGTTGTCGTGCAGGGCAACACGGTACCCTGTTTTATGTGTCCACTCGCTGTTGGCCTACGCAGGCGTCATTCACCGAAGCGACCGGCAACTTGCGATGACGGCTTTGTCGGTGAGTATATCAAGGACCCGAAAATTCCTGAAGAAGATGTCGAAAGCGAGAGGCATGAAGGGTAGGGAGTGGAGAGCTGTGCAAGATTGTGTGGAGACCATTGGTAACAGCGTGGAGCGTCTCAAGCAATCGGTTAGGGAGTTGGGGCGAACGGGGTTGGGGAAAGACTTTGCATGGCACATGAGCAACGTCCAGACATGGGTTAGCGCTGCCTTAACCGACGACAACACTTGTCTCGACGGCTTTGCCGGTTCCGCCATGAACGGAAACGTGAAGAGCGATATAACGGAGAGGGTTGTCCACGTTGCTCAAGTCACTAGCAACGCTCTCGCCTTGGTTAATCGCTTTGCTTCCACCCACGCTACTCACTCTCCTTAA 606 0.5248 MATTVRLVSLLLMNLVIYMSSTAQCSITKHADPNPAEFVKLSCRATRYPVLCVHSLLAYAGVIHRSDRQLAMTALSVSISRTRKFLKKMSKARGMKGREWRAVQDCVETIGNSVERLKQSVRELGRTGLGKDFAWHMSNVQTWVSAALTDDNTCLDGFAGSAMNGNVKSDITERVVHVAQVTSNALALVNRFASTHATHSP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5768g00023 201 FunFam Pectin methylesterase inhibitor 1 34 192 - -
Vium5768g00023 201 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 192 IPR035513 -
Vium5768g00023 201 PANTHER PECTINESTERASE INHIBITOR-LIKE 11 188 - -
Vium5768g00023 201 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 192 IPR035513 -
Vium5768g00023 201 NCBIfam pectinesterase inhibitor domain 9 190 IPR006501 GO:0004857
Vium5768g00023 201 Pfam Plant invertase/pectin methylesterase inhibitor 38 188 IPR006501 GO:0004857
Vium5768g00023 201 CDD PMEI-like_3 41 194 - -
Vium5768g00023 201 SMART PMEI_2 34 188 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5768g00023 Vium-Chr5768 102692 103548 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5768g00023 33 195 Carbohydrate Esterase AT3G14310 30.000 1.73e-21 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5768g00023 - - gmx:100776636 277.33