Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5768g00014 ATGGAAATTCCTTGCCTTCTTTCTCTCTTTCTTCTGATTTCTTTTCTCATTCCTCGTATGGTTCTTGGAACTGCGGAGCTTAGAGCTCTGATGGAGTTGAAGTCCTCTCTGGACCCAGATGGCAAGATCCTAGCCTCGTGGATCAGTGACGGTGACCCATGCAGTGGCTCGTTCGAAGGGGTTGCGTGCAACCAGAACCAGAAAGTGGCCAACATCTCCTTGCAGGGAAAGGGTCTTTCCGGTTGGCTATCTCCAGCACTGGCTGAACTCAAATGCTTGTCGGGTTTATACTTGCATTATAACAACCTTTCTGGTGAGATACCGCCACACATTTCAAATCTCACTGATCTGGCTGATCTCTATCTCGACGTGAATAGTTTATCTGGAACTATTCCTCCTGAGCTCGGCAACATGGCTAGTCTCCAAGTGCTGCAGTTAGGTGATAACCAGTTGGTGGGGAATATACCGACACAGATGGGTTCGTTAAAGCAGCTTAGTACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCCCTTAGCTTGGGGACTCTAGAGAAGTTAAGAAGGCTAAATTTGAGCTTCAACAACTTTAATGGTACTGTTCCGGCAACACTAGCACATCTTCAACATTTGGAAGTTCTAGACGTTCAGAACAATTCTTTATCAGGAATTGTTCCTTCGGCATTGAAGAGACTTGGGGAAGGTTTCCAAGGTGCAAACAATCCGGGCTTATGTGGAGTTGAGTTTTCTACTTTGAGAGCTTGCAACAAAGATCAGAATTTAAACGTCAACCATATTGATACCTTGGATCGAGATCAACCCAAAAAGGCTCTCCCAGAGCCTGCAAATGTTCAGTTGCATTGTGATCACACCCATTGTTCAAAATCAAGGTTTCCTCAAATTGTCATCACAGTAGGTGTTATAGCTGTTACTCTTACATTCGTATGTGCTGGGTTTTTGACATTCTTCAGATACCGCCGTCAAAAGCAACGGATCAGCAATACATCAAGTTCTTCTTCTCAAGGGAAACTTAGTCCTTACCAGCCTAAAGAGTTGTACACAAAAAGTCCTTCTGCACTTGTTAATATTGAGTATTATAGTGGGTGGGATCATTTGTCTAACGGTCAAAACGCTGATGTCGGTGGGTTATTGAATGATTATCTAACTCAATTCAGGTTTAATGTGGATGAGGTTGAATCCGCAACACAGTATTTCTCGGAAGCCAGTTTACTTGGTAAGAGCAAATTCTCATCAGTTTATAAAGGAGTTATCAGAGATGGTTCTCTTGTGGCTATCAGAAGCATCAGCGTGACATGCTGTAAAACCGAGGAAGCCGAATTTGTAAAGGGGTTGGACTTACTAACCTCTCTGAGACATGAAAACCTTGTTAGGCTGAGAGGTTTTTGTTGCTCAAGGAGTAGAGGTGAATGTTTCCTTATCTATGACTTTGCCACCATGGGTAACCTTTCCCGATATCTTGACTTAGAAGATGGAAGTGACCATGTGCTCGAGTGGTCCAAAAGAGTTTCTATTATCAAAGGCATTGCAAACGGCATTGGATATCTTCATAGCAATGATGCAAGCAAACCTACAATAGTTCACCAGAACATTTCAGTGGAAAATATTCTCCTAGACAATCAGTTTAATCCATTGATCATGGATGCTGGACTACCTAAGCTTCTCGCAGATGATGTTGTTTTCTCAGCTCTTAAAGTAAGTGCTGCAATGGGATACTTGGCTCCCGAATACATTACTACCGGACGATTTACTGAGAAGAGTGACATATACGCATTTGGAGTTATTATTCTTCAAGTTCTGTCTGGCAAGACGACAATAGGTAGTTCAATACGTACAGCAGTTGAGTCTTTCAGATTTGATGATTCTGTTGATGCCAATCTTAGGGGAACGTATTCAAAATCTGAAGCAGCTACACTTTCAAAGCTTGCAATACAGTGTACTCATGAATCTCCTGACCAAAGACCAACGGTGGTGGATGTGATTCAGGAGTTGAGTGTGTCTTCTGCTCATTTGTAA 2040 0.4245 MEIPCLLSLFLLISFLIPRMVLGTAELRALMELKSSLDPDGKILASWISDGDPCSGSFEGVACNQNQKVANISLQGKGLSGWLSPALAELKCLSGLYLHYNNLSGEIPPHISNLTDLADLYLDVNSLSGTIPPELGNMASLQVLQLGDNQLVGNIPTQMGSLKQLSTLALQYNKLTGQIPLSLGTLEKLRRLNLSFNNFNGTVPATLAHLQHLEVLDVQNNSLSGIVPSALKRLGEGFQGANNPGLCGVEFSTLRACNKDQNLNVNHIDTLDRDQPKKALPEPANVQLHCDHTHCSKSRFPQIVITVGVIAVTLTFVCAGFLTFFRYRRQKQRISNTSSSSSQGKLSPYQPKELYTKSPSALVNIEYYSGWDHLSNGQNADVGGLLNDYLTQFRFNVDEVESATQYFSEASLLGKSKFSSVYKGVIRDGSLVAIRSISVTCCKTEEAEFVKGLDLLTSLRHENLVRLRGFCCSRSRGECFLIYDFATMGNLSRYLDLEDGSDHVLEWSKRVSIIKGIANGIGYLHSNDASKPTIVHQNISVENILLDNQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIILQVLSGKTTIGSSIRTAVESFRFDDSVDANLRGTYSKSEAATLSKLAIQCTHESPDQRPTVVDVIQELSVSSAHL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5768g00014 679 Gene3D Phosphorylase Kinase; domain 1 377 485 - -
Vium5768g00014 679 FunFam Protein NSP-INTERACTING KINASE 2 486 676 - -
Vium5768g00014 679 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 140 674 IPR046959 -
Vium5768g00014 679 SUPERFAMILY Protein kinase-like (PK-like) 389 673 IPR011009 -
Vium5768g00014 679 FunFam Protein NSP-INTERACTING KINASE 2 23 172 - -
Vium5768g00014 679 ProSiteProfiles Protein kinase domain profile. 407 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5768g00014 679 Pfam Protein tyrosine and serine/threonine kinase 411 672 IPR001245 GO:0004672|GO:0006468
Vium5768g00014 679 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Vium5768g00014 679 SMART LRR_typ_2 210 233 IPR003591 -
Vium5768g00014 679 SMART LRR_typ_2 138 162 IPR003591 -
Vium5768g00014 679 SMART LRR_typ_2 186 209 IPR003591 -
Vium5768g00014 679 SMART LRR_typ_2 90 114 IPR003591 -
Vium5768g00014 679 FunFam Protein NSP-INTERACTING KINASE 2 378 485 - -
Vium5768g00014 679 Gene3D Ribonuclease Inhibitor 24 174 IPR032675 -
Vium5768g00014 679 SUPERFAMILY L domain-like 26 233 - -
Vium5768g00014 679 Pfam Leucine rich repeat 188 234 IPR001611 GO:0005515
Vium5768g00014 679 Gene3D Ribonuclease Inhibitor 175 243 IPR032675 -
Vium5768g00014 679 Gene3D Transferase(Phosphotransferase) domain 1 488 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5768g00014 Vium-Chr5768 55118 58446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5768g00014 5 520 Miscellaneous Gene Families AT4G22730 57.062 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vium5768g00014 PK_Tyr_Ser-Thr 3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5768g00014 - - gmx:100797612 1170.99